SMTL ID : 8a8c.1

T5 phage receptor-binding protein pb5 bound to ferrichrome transporter FhuA

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x LU9: [(2R,3S,4R,5R,6R)-2-[[(2R,4R,5R,6R)-6-[(1R)-1,2-bis(oxidanyl)ethyl]-4-[(2R,4R,5R,6R)-6-[(1R)-1,2-bis(oxidanyl)ethyl]-2-carboxy-4,5-bis(oxidanyl)oxan-2-yl]oxy-2-carboxy-5-oxidanyl-oxan-2-yl]oxymethyl]-5-[[(3R)-3-dodecanoyloxytetradecanoyl]amino]-4-(3-nonanoyloxypropanoyloxy)-6-[[(2R,3S,4R,5R,6R)-3-oxidanyl-4-[(3S)-3-oxidanyltetradecanoyl]oxy-5-[[(3R)-3-oxidanyltridecanoyl]amino]-6-phosphonatooxy-oxan-2-yl]methoxy]oxan-3-yl] phosphate(Non-covalent)

LU9.1: 15 residues within 4Å: Chain A: F.231, V.282, Y.284, Q.298, L.300, F.302, K.351, Q.353, F.355, F.380, R.382, R.384, D.386, L.426, K.428 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:F.231, A:F.231, A:V.282, A:Y.284, A:Y.284, A:L.300, A:L.300, A:F.302, A:F.302, A:F.302, A:F.355, A:F.355, A:F.380, A:F.380 Hydrogen bonds: A:K.351, A:Q.353, A:R.382, A:R.382 Salt bridges: A:K.351, A:R.382, A:R.382, A:R.384, A:R.384, A:R.384, A:R.384, A:K.428

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

van den Berg, B. et al., Structural basis for host recognition and superinfection exclusion by bacteriophage T5. Proc.Natl.Acad.Sci.USA (2022)

Release Date

2022-10-05

Peptides

Ferrichrome outer membrane transporter/phage receptor: A
Receptor-binding protein pb5: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Ferrichrome outer membrane transporter/phage receptor

Receptor-binding protein pb5