SMTL ID : 8a9c.1

Structure of truncated 1-deoxy-D-xylulose 5-phosphate synthase (DXS) from Klebsiella pneumoniae in complex with cofactor TPP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

1 x TPP: THIAMINE DIPHOSPHATE(Non-covalent)

TPP.1: 21 residues within 4Å: Chain B: S.52, V.78, G.79, G.121, H.122, S.123, G.151, D.152, G.153, A.154, N.179, N.181, P.310, A.311, M.312, I.334, E.336, F.361, R.364, H.397 Ligands: MG.2 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:I.334, B:F.361 Hydrogen bonds: B:S.52, B:Q.81, B:S.123, B:G.153, B:N.181 Water bridges: B:V.78, B:G.151 pi-Stacking: B:F.361

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain B: G.151, D.152, N.179, N.181 Ligands: TPP.1 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.152

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Adam, S. et al., Structure of truncated 1-deoxy-D-xylulose 5-phosphate synthase (DXS) from Klebsiella pneumoniae in complex with cofactor TPP. To Be Published

Release Date

2023-07-12

Peptides

1-deoxy-D-xylulose-5-phosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

1-deoxy-D-xylulose-5-phosphate synthase

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