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SMTL ID : 8a9l.1

Cryo-EM structure of alpha-synuclein filaments from Parkinson's disease and dementia with Lewy bodies

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 2.20 Å

Oligo State

homo-trimer

Ligands

6 x UNK- UNK- UNK- UNK- UNK- UNK- UNK- UNK- UNK: Unknown fragment(Non-covalent)

UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.1:	23 residues within 4Å: Chain A: A.85, S.87, A.89 Chain B: A.85, G.86, I.88 Ligands: UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.3, UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.3, UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.3, UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.3, UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.3, UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.3, UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.3, UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.3, UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.3, UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.5, UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.5, UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.5, UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.5, UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.5, UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.5, UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.5, UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.87
UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.2:	19 residues within 4Å: Chain A: H.50, V.55 Chain B: H.50, A.53, V.55 Ligands: UNK-UNK-UNK-UNK-VAL-UNK-UNK.4, UNK-UNK-UNK-UNK-VAL-UNK-UNK.4, UNK-UNK-UNK-UNK-VAL-UNK-UNK.4, UNK-UNK-UNK-UNK-VAL-UNK-UNK.4, UNK-UNK-UNK-UNK-VAL-UNK-UNK.4, UNK-UNK-UNK-UNK-VAL-UNK-UNK.4, UNK-UNK-UNK-UNK-VAL-UNK-UNK.4, UNK-UNK-UNK-UNK-VAL-UNK-UNK.6, UNK-UNK-UNK-UNK-VAL-UNK-UNK.6, UNK-UNK-UNK-UNK-VAL-UNK-UNK.6, UNK-UNK-UNK-UNK-VAL-UNK-UNK.6, UNK-UNK-UNK-UNK-VAL-UNK-UNK.6, UNK-UNK-UNK-UNK-VAL-UNK-UNK.6, UNK-UNK-UNK-UNK-VAL-UNK-UNK.6 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:A.53, B:V.55
UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.3:	11 residues within 4Å: Chain B: A.85, S.87, A.89 Ligands: UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.1, UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.1, UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.1, UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.1, UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.1, UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.1, UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.1, UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.1 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.87
UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.4:	9 residues within 4Å: Chain B: H.50, V.55 Ligands: UNK-UNK-UNK-UNK-VAL-UNK-UNK.2, UNK-UNK-UNK-UNK-VAL-UNK-UNK.2, UNK-UNK-UNK-UNK-VAL-UNK-UNK.2, UNK-UNK-UNK-UNK-VAL-UNK-UNK.2, UNK-UNK-UNK-UNK-VAL-UNK-UNK.2, UNK-UNK-UNK-UNK-VAL-UNK-UNK.2, UNK-UNK-UNK-UNK-VAL-UNK-UNK.2 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:V.55
UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.5:	15 residues within 4Å: Chain A: A.85, G.86, I.88 Chain C: A.85, S.87, A.89 Ligands: UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.1, UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.1, UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.1, UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.1, UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.1, UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.1, UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.1, UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.1, UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.1 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:S.87
UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.6:	12 residues within 4Å: Chain A: H.50, A.53, V.55 Chain C: H.50, V.55 Ligands: UNK-UNK-UNK-UNK-VAL-UNK-UNK.2, UNK-UNK-UNK-UNK-VAL-UNK-UNK.2, UNK-UNK-UNK-UNK-VAL-UNK-UNK.2, UNK-UNK-UNK-UNK-VAL-UNK-UNK.2, UNK-UNK-UNK-UNK-VAL-UNK-UNK.2, UNK-UNK-UNK-UNK-VAL-UNK-UNK.2, UNK-UNK-UNK-UNK-VAL-UNK-UNK.2 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:A.53, A:V.55

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Yang, Y. et al., Structures of alpha-synuclein filaments from human brains with Lewy pathology. Nature (2022)

Release Date

2022-08-31

Peptides

Alpha-synuclein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Alpha-synuclein

Toggle Identical (ABC)

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Cartoon
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Background

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