SMTL ID : 8aa1.1

Core SusCD transporter units from the levan utilisome with levan fructo-oligosaccharides DP 8-12

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

2 x FRU- FRU- FRU- FRU: beta-D-fructofuranose-(2-6)-beta-D-fructofuranose-(2-6)-beta-D-fructofuranose-(2-6)-beta-D-fructofuranose

FRU-FRU-FRU-FRU.1: 10 residues within 4Å: Chain B: A.191, G.192, H.194, E.195, Q.397, Y.447, Y.449, K.479, E.506, W.508 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:W.508 FRU-FRU-FRU-FRU.2: 10 residues within 4Å: Chain D: A.191, G.192, H.194, E.195, Q.397, Y.447, Y.449, K.479, E.506, W.508 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:W.508

2 x FRU- FRU- FRU- FRU- FRU- FRU- FRU: beta-D-fructofuranose-(2-6)-beta-D-fructofuranose-(2-6)-beta-D-fructofuranose-(2-6)-[beta-D-fructofuranose-(2-1)]beta-D-fructofuranose-(2-6)-beta-D-fructofuranose-(2-6)-beta-D-fructofuranose

FRU-FRU-FRU-FRU-FRU-FRU-FRU.3: 22 residues within 4Å: Chain A: D.59, I.60, N.61, D.85, G.86, W.103, L.308, C.316, C.317, F.319, R.386, K.410, S.412, Y.413 Chain B: E.404, T.405, D.431, R.432, Q.493, F.674, N.926, V.927 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.431, B:D.431, B:Q.493 FRU-FRU-FRU-FRU-FRU-FRU-FRU.4: 22 residues within 4Å: Chain C: D.59, I.60, N.61, D.85, G.86, W.103, L.308, C.316, C.317, F.319, R.386, K.410, S.412, Y.413 Chain D: E.404, T.405, D.431, R.432, Q.493, F.674, N.926, V.927 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:D.431, D:Q.493, C:K.410

4 x MG: MAGNESIUM ION(Non-covalent)

MG.5: 5 residues within 4Å: Chain A: E.280, Y.291, S.417, N.419 Chain B: N.689 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.280, A:Y.291, A:S.417 MG.6: 6 residues within 4Å: Chain B: D.862, D.864, N.866, V.868, D.870, D.873 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.862, B:D.864, B:V.868, B:D.873, B:D.873 MG.7: 5 residues within 4Å: Chain C: E.280, Y.291, S.417, N.419 Chain D: N.689 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:E.280, C:Y.291, C:S.417 MG.8: 6 residues within 4Å: Chain D: D.862, D.864, N.866, V.868, D.870, D.873 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:D.862, D:D.864, D:V.868, D:D.873, D:D.873

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

White, J.B.R. et al., Outer membrane utilisomes mediate glycan uptake in gut Bacteroidetes. Nature (2023)

Release Date

2023-06-07

Peptides

SusD homolog: AC
SusC homolog: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

C
J

B
A

D
I

Membrane

We predict this structure to be a membrane protein.
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SusD homolog

SusC homolog

Related Entries With Identical Sequence