SMTL ID : 8aaa.1

Crystal structure of SARS-CoV-2 S RBD in complex with a stapled peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 29N: 1,1',1''-(1,3,5-triazinane-1,3,5-triyl)tripropan-1-one(Covalent)

29N.1: 7 residues within 4Å: Chain A: E.155 Chain B: C.2, C.7, R.10, H.11, L.15, C.16 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:R.10 Hydrogen bonds: B:R.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gaynor, K.U. et al., Multivalent bicyclic peptides are an effective antiviral modality that can potently inhibit SARS-CoV-2. Nat Commun (2023)

Release Date

2023-06-28

Peptides

Spike protein S1: A
Stapled peptide: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Spike protein S1

Stapled peptide

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