SMTL ID : 8aan.1

The nucleoprotein complex of Rep protein with iteron containing dsDNA and DUE ssDNA.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

monomer

Ligands

1 x DA- DT- DT- DT- DT- DT- DA- DT: DNA (5'-D(*AP*TP*TP*TP*TP*TP*AP*T)-3')(Non-covalent)

DA-DT-DT-DT-DT-DT-DA-DT.1: 15 residues within 4Å: Chain C: N.8, R.17, N.22, R.47, L.142, Q.143, N.144, R.145, F.146, Q.148, Q.171, Y.172, I.180, V.181, S.182 Protein-ligand interaction information (PLIP) not available

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain C: E.77, D.81 5 PLIP interactions: 2 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:E.77, C:D.81, H2O.5, H2O.6, H2O.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wegrzyn, K. et al., Rep protein accommodates together dsDNA and ssDNA which enables a loop-back mechanism to plasmid DNA replication initiation. Nucleic Acids Res. (2023)

Release Date

2023-09-27

Peptides

Replication initiation protein: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

Replication initiation protein

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