SMTL ID : 8acs.1 (1 other biounit)

Crystal structure of FMO from Janthinobacterium svalbardensis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 29 residues within 4Å: Chain A: G.190, G.192, Q.193, G.194, I.212, E.213, K.214, N.215, S.221, W.222, K.224, R.225, L.229, C.230, L.231, H.232, D.233, T.277, S.278, C.279, A.312, T.313, G.314, D.362, W.530, L.534, G.581, N.582, L.583 30 PLIP interactions: 30 interactions with chain A Hydrophobic interactions: A:L.229 Hydrogen bonds: A:G.192, A:Q.193, A:Q.193, A:G.194, A:K.214, A:K.224, A:K.224, A:R.225, A:R.225, A:H.232, A:H.232, A:D.233, A:D.233, A:D.233, A:C.279, A:C.279, A:L.583 Water bridges: A:G.195, A:S.221, A:S.221, A:G.314, A:G.314, A:M.315, A:M.315, A:H.584, A:S.586 pi-Stacking: A:W.222, A:H.232 pi-Cation interactions: A:K.214 FAD.6: 30 residues within 4Å: Chain B: I.189, G.190, G.191, G.192, Q.193, G.194, I.212, E.213, K.214, N.215, S.221, W.222, R.225, L.229, C.230, L.231, H.232, D.233, T.277, S.278, C.279, A.312, T.313, G.314, D.362, L.534, G.580, G.581, N.582, L.583 27 PLIP interactions: 27 interactions with chain B Hydrophobic interactions: B:L.229 Hydrogen bonds: B:G.191, B:G.192, B:Q.193, B:G.194, B:K.214, B:N.215, B:K.224, B:K.224, B:R.225, B:R.225, B:H.232, B:D.233, B:D.233, B:C.279, B:C.279, B:G.314, B:L.583 Water bridges: B:Q.193, B:G.195, B:S.221, B:M.315, B:G.581, B:H.584 pi-Stacking: B:W.222, B:H.232 pi-Cation interactions: B:K.214

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: H.232, D.233, F.464, Y.467, Y.474, I.476, N.582 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.233, A:Y.474, A:Y.474, A:N.582 GOL.3: 6 residues within 4Å: Chain A: E.98, W.110, A.406, G.407, M.408, K.412 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.110, A:A.406, A:K.412 GOL.4: 6 residues within 4Å: Chain A: M.315, R.470, G.471, Y.524, G.525, W.547 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.471, A:G.525 GOL.7: 8 residues within 4Å: Chain B: H.232, D.233, L.463, F.464, Y.467, Y.474, I.476, N.582 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.474, B:N.582 GOL.9: 5 residues within 4Å: Chain B: A.95, E.98, V.121, N.411, K.412 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.411 GOL.10: 9 residues within 4Å: Chain B: M.315, S.316, R.470, G.471, Y.524, G.525, S.526, V.546, W.547 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.471, B:V.546 GOL.11: 6 residues within 4Å: Chain B: K.68, T.69, Q.75, W.560, E.561, Q.612 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.69, B:Q.75

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) PEG.8: 4 residues within 4Å: Chain B: E.98, H.99, W.110, K.412 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.98, B:H.99, B:K.412

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chanique, A.M. et al., A Cold-Active Flavin-Dependent Monooxygenase from Janthinobacterium svalbardensis Unlocks Applications of Baeyer-Villiger Monooxygenases at Low Temperature. Acs Catalysis (2023)

Release Date

2022-09-07

Peptides

FAD-dependent oxidoreductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

FAD-dependent oxidoreductase

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