SMTL ID : 8ad9.1 (1 other biounit)

Crystal structure of ClpC2 C-terminal domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.43 Å

Oligo State

monomer

Ligands

1 x LTU- WLU- ALA- WPA- VAL- MLE- WVL: Cyclomarin A(Non-covalent)

LTU-WLU-ALA-WPA-VAL-MLE-WVL.1: 19 residues within 4Å: Chain A: Q.7, G.8, F.9, R.17, V.20, V.21, Q.24, I.35, P.82, I.83, P.84, F.85, R.90, L.93, E.94, F.97 Ligands: ACT.2, SO4.6, EDO.7 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:F.9, A:F.9, A:R.17, A:V.21, A:Q.24, A:I.35, A:P.82, A:P.84, A:F.85, A:L.93, A:F.97 Hydrogen bonds: A:F.9, A:F.85, A:E.94 pi-Stacking: A:F.9

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 5 residues within 4Å: Chain A: F.9, R.10, R.17 Ligands: LTU-WLU-ALA-WPA-VAL-MLE-WVL.1, SO4.6 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.17

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 7 residues within 4Å: Chain A: T.143, T.144, L.145, A.146, S.147, L.148, T.149 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.143

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 1 residues within 4Å: Chain A: G.150 2 PLIP interactions: 2 interactions with chain A Water bridges: A:L.148, A:G.150 SO4.5: 10 residues within 4Å: Chain A: T.13, R.15, A.16, A.50, L.51, G.109, T.110, E.111, N.152, A.153 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.13, A:A.16, A:L.51, A:T.110, A:A.153 Water bridges: A:R.15, A:R.15 SO4.6: 6 residues within 4Å: Chain A: G.8, F.9, R.10 Ligands: LTU-WLU-ALA-WPA-VAL-MLE-WVL.1, ACT.2, EDO.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.9, A:R.10 Salt bridges: A:R.10

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.7: 3 residues within 4Å: Ligands: LTU-WLU-ALA-WPA-VAL-MLE-WVL.1, LTU-WLU-ALA-WPA-VAL-MLE-WVL.1, SO4.6 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Taylor, G. et al., ClpC2 protects mycobacteria against a natural antibiotic targeting ClpC1-dependent protein degradation. Commun Biol (2023)

Release Date

2023-03-29

Peptides

Putative ATP-dependent protease ATP-binding subunit ClpC2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative ATP-dependent protease ATP-binding subunit ClpC2

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