SMTL ID : 8adg.1

Cryo-EM structure of Darobactin 22 bound BAM complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x TRP- ASN- UX8- THR- LYS- ARG- TRP: Darobactin 22(Non-covalent)

TRP-ASN-UX8-THR-LYS-ARG-TRP.1: 21 residues within 4Å: Chain A: R.424, N.425, T.426, G.427, S.428, F.429, N.430, F.431, G.432, I.433, G.434, Q.444, V.447, Q.448, Q.449, D.450, P.782, L.783, G.784, G.810, W.813 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.429, A:F.431 Hydrogen bonds: A:N.425, A:N.425, A:N.425, A:G.427, A:S.428, A:S.428, A:F.429, A:F.429, A:F.431, A:F.431, A:I.433, A:Q.444

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seyfert, C.E. et al., Darobactins Exhibiting Superior Antibiotic Activity by Cryo-EM Structure Guided Biosynthetic Engineering. Angew.Chem.Int.Ed.Engl. (2023)

Release Date

2023-01-11

Peptides

Outer membrane protein assembly factor BamA: A
Outer membrane protein assembly factor BamB: B
Outer membrane protein assembly factor BamC: C
Outer membrane protein assembly factor BamD: D
Outer membrane protein assembly factor BamE: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

Membrane

We predict this structure to be a membrane protein.
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Outer membrane protein assembly factor BamA

Outer membrane protein assembly factor BamB

Outer membrane protein assembly factor BamC

Outer membrane protein assembly factor BamD

Outer membrane protein assembly factor BamE

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