SMTL ID : 8adl.1

Cryo-EM structure of the SEA complex

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-6-4-2-2-2-2-2-mer

Ligands

28 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.1098, C.1101, H.1120, C.1123 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.1098, A:C.1101, A:H.1120, A:C.1123 ZN.2: 4 residues within 4Å: Chain A: C.1112, C.1115, C.1140, C.1142 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.1112, A:C.1115, A:C.1140, A:C.1142 ZN.3: 5 residues within 4Å: Chain A: C.1115, H.1117, C.1134, S.1136, C.1138 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.1115, A:H.1117, A:C.1134, A:C.1138 ZN.4: 4 residues within 4Å: Chain C: C.953, C.956, H.1013, H.1016 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.953, C:C.956, C:H.1013, C:H.1016 ZN.5: 4 residues within 4Å: Chain C: C.881, C.884, C.943, C.946 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.881, C:C.884, C:C.943, C:C.946 ZN.6: 4 residues within 4Å: Chain C: C.1005, C.1008, C.1034, C.1036 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.1005, C:C.1008, C:C.1034, C:C.1036 ZN.7: 5 residues within 4Å: Chain C: C.1008, H.1010, C.1027, T.1029, C.1032 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.1008, C:H.1010, C:C.1027, C:C.1032 ZN.8: 4 residues within 4Å: Chain E: C.1293, C.1296, H.1315, C.1318 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.1293, E:C.1296, E:H.1315, E:C.1318 ZN.9: 4 residues within 4Å: Chain E: C.1246, C.1249, C.1283, C.1286 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.1246, E:C.1249, E:C.1283, E:C.1286 ZN.10: 4 residues within 4Å: Chain E: C.1310, H.1312, C.1331, C.1335 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.1310, E:H.1312, E:C.1331, E:C.1335 ZN.11: 5 residues within 4Å: Chain F: C.881, C.884, C.943, C.946, S.948 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.881, F:C.884, F:C.943, F:C.946 ZN.12: 4 residues within 4Å: Chain F: C.1005, C.1008, C.1034, C.1036 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.1005, F:C.1008, F:C.1034, F:C.1036 ZN.13: 4 residues within 4Å: Chain F: C.953, C.956, H.1013, H.1016 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.953, F:C.956, F:H.1013, F:H.1016 ZN.14: 5 residues within 4Å: Chain F: C.1008, H.1010, C.1027, T.1029, C.1032 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.1008, F:H.1010, F:C.1027, F:C.1032 ZN.15: 4 residues within 4Å: Chain I: C.1098, C.1101, H.1120, C.1123 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.1098, I:C.1101, I:H.1120, I:C.1123 ZN.16: 4 residues within 4Å: Chain I: C.1112, C.1115, C.1140, C.1142 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.1112, I:C.1115, I:C.1140, I:C.1142 ZN.17: 5 residues within 4Å: Chain I: C.1115, H.1117, C.1134, S.1136, C.1138 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.1115, I:H.1117, I:C.1134, I:C.1138 ZN.18: 4 residues within 4Å: Chain K: C.953, C.956, H.1013, H.1016 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.953, K:C.956, K:H.1013, K:H.1016 ZN.19: 4 residues within 4Å: Chain K: C.881, C.884, C.943, C.946 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.881, K:C.884, K:C.943, K:C.946 ZN.20: 4 residues within 4Å: Chain K: C.1005, C.1008, C.1034, C.1036 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.1005, K:C.1008, K:C.1034, K:C.1036 ZN.21: 5 residues within 4Å: Chain K: C.1008, H.1010, C.1027, T.1029, C.1032 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.1008, K:H.1010, K:C.1027, K:C.1032 ZN.22: 4 residues within 4Å: Chain M: C.1293, C.1296, H.1315, C.1318 4 PLIP interactions: 4 interactions with chain M Metal complexes: M:C.1293, M:C.1296, M:H.1315, M:C.1318 ZN.23: 4 residues within 4Å: Chain M: C.1246, C.1249, C.1283, C.1286 4 PLIP interactions: 4 interactions with chain M Metal complexes: M:C.1246, M:C.1249, M:C.1283, M:C.1286 ZN.24: 4 residues within 4Å: Chain M: C.1310, H.1312, C.1331, C.1335 4 PLIP interactions: 4 interactions with chain M Metal complexes: M:C.1310, M:H.1312, M:C.1331, M:C.1335 ZN.25: 5 residues within 4Å: Chain N: C.881, C.884, C.943, C.946, S.948 4 PLIP interactions: 4 interactions with chain N Metal complexes: N:C.881, N:C.884, N:C.943, N:C.946 ZN.26: 4 residues within 4Å: Chain N: C.1005, C.1008, C.1034, C.1036 4 PLIP interactions: 4 interactions with chain N Metal complexes: N:C.1005, N:C.1008, N:C.1034, N:C.1036 ZN.27: 4 residues within 4Å: Chain N: C.953, C.956, H.1013, H.1016 4 PLIP interactions: 4 interactions with chain N Metal complexes: N:C.953, N:C.956, N:H.1013, N:H.1016 ZN.28: 5 residues within 4Å: Chain N: C.1008, H.1010, C.1027, T.1029, C.1032 4 PLIP interactions: 4 interactions with chain N Metal complexes: N:C.1008, N:H.1010, N:C.1027, N:C.1032

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tafur, L. et al., Cryo-EM structure of the SEA complex. Nature (2022)

Release Date

2022-11-02

Peptides

Maintenance of telomere capping protein 5: AI
Nucleoporin SEH1: BGHJOP
SEH-associated protein 4: CFKN
Protein transport protein SEC13: DL
Restriction of telomere capping protein 1: EM
Nitrogen permease regulator 3: QT
Vacuolar membrane-associated protein IML1: RU
Nitrogen permease regulator 2: SV

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

I
Q

B
E

G
D

H
F

J
M

O
L

P
N

C
G

F
B

K
O

N
J

D
H

L
P

E
A

M
I

Q
U

T
V

R
W

U
X

S
S

V
T

Maintenance of telomere capping protein 5

Nucleoporin SEH1

SEH-associated protein 4

Protein transport protein SEC13

Restriction of telomere capping protein 1

Nitrogen permease regulator 3

Vacuolar membrane-associated protein IML1

Nitrogen permease regulator 2

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