SMTL ID : 8af1.1

Beta-Lytic Protease from Lysobacter capsici

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.57 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.22, D.36, H.123 Ligands: FMT.5 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.22, A:D.36, A:D.36, A:H.123

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: N.89, A.92 Ligand excluded by PLIP

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: N.24, F.67, Y.81, N.113, H.123 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.24, A:N.113, A:H.123 Water bridges: A:T.79 GOL.4: 6 residues within 4Å: Chain A: Y.168, C.169, Y.170, G.171, Y.172, Y.173 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.170, A:Y.172, A:Y.172

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.5: 7 residues within 4Å: Chain A: H.22, D.36, H.82, H.121, H.123, Y.152 Ligands: ZN.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.152

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Afoshin, A. et al., Structural and Functional Characterization of beta-lytic Protease from Lysobacter capsici VKM B-2533 T. Int J Mol Sci (2022)

Release Date

2023-08-16

Peptides

Peptidase M23: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidase M23