SMTL ID : 8age.1

Structure of yeast oligosaccharylransferase complex with acceptor peptide bound

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-1-1-1-mer
Ligands
1 x TYR- ALA- ASN- ALA- THR- SER- ALA: PEPTIDE(Non-covalent)
1 x NAG- NAG- BMA- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
1 x MN: MANGANESE (II) ION(Non-covalent)
4 x CPL: 1-PALMITOYL-2-LINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)
1 x PTY: PHOSPHATIDYLETHANOLAMINE(Non-covalent)
8 x KZB: (2~{S},3~{R},4~{R},5~{S},6~{S})-2-(hydroxymethyl)-6-[(1~{S},2~{R},3~{R},4~{R},5'~{S},6~{S},7~{R},8~{S},9~{R},12~{R},13~{R},15~{S},16~{S},18~{R})-5',7,9,13-tetramethyl-3,15-bis(oxidanyl)spiro[5-oxapentacyclo[10.8.0.0^{2,9}.0^{4,8}.0^{13,18}]icosane-6,2'-oxane]-16-yl]oxy-oxane-3,4,5-triol(Non-covalent)(Covalent)
2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
1 x 323: 2-[3,6-bis(dimethylamino)xanthen-9-yl]-5-methanoyl-benzoate(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Ramirez, A.S. et al., Molecular basis for glycan recognition and reaction priming of eukaryotic oligosaccharyltransferase. Nat Commun (2022)
Release Date
2022-12-07
Peptides
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3: A
OST4 isoform 1: B
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit OST5: C
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit OST2: D
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1: E
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2: F
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit WBP1: G
OST3 isoform 1: H
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
D
E
E
F
F
G
G
H
H
Membrane
We predict this structure to be a membrane protein.

Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3

OST4 isoform 1

Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit OST5

Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit OST2

Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1

Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2

Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit WBP1

OST3 isoform 1

Related Entries With Identical Sequence

6c26.1 | 6ezn.1 | 7oci.1 | 8agb.1 | 8agc.1