SMTL ID : 8ahe.1

PAC-FragmentDEL: Photoactivated covalent capture of DNA encoded fragments for hit discovery

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

homo-dimer

Ligands

2 x M2U: ~{N},5-dimethyl-1-phenyl-pyrazole-4-sulfonamide(Non-covalent)

M2U.1: 12 residues within 4Å: Chain A: T.211, P.244, P.270, L.271, V.273, F.276, H.277, S.290, G.292, V.293, E.296 Ligands: SO4.3 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:T.211, A:F.276 Hydrogen bonds: A:L.271 pi-Stacking: A:F.276 M2U.6: 13 residues within 4Å: Chain B: T.211, H.213, P.244, P.270, L.271, D.272, V.273, F.276, H.277, S.290, G.292, V.293, E.296 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:F.276, B:V.293 Hydrogen bonds: B:L.271 pi-Stacking: B:F.276

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: P.298, S.299, A.352, S.353, N.354 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.354 Water bridges: A:S.299 SO4.3: 5 residues within 4Å: Chain A: H.213, S.290, G.291, G.292 Ligands: M2U.1 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.290, A:S.290, A:G.291, A:G.292 Water bridges: A:H.213, A:H.213 Salt bridges: A:H.213 SO4.4: 7 residues within 4Å: Chain A: G.16, T.17, R.18, A.46, Q.47, H.48, K.71 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.17, A:R.18, A:Q.47, A:Q.47, A:H.48 Salt bridges: A:R.18, A:K.71 SO4.5: 5 residues within 4Å: Chain A: A.212, H.213, R.214, R.215, E.216 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.214, A:R.215, A:E.216, A:E.216 Salt bridges: A:R.214 SO4.7: 8 residues within 4Å: Chain B: G.16, T.17, R.18, P.19, A.46, Q.47, H.48, K.71 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:R.18, B:Q.47, B:H.48 Salt bridges: B:R.18, B:H.48, B:K.71 SO4.8: 5 residues within 4Å: Chain B: R.214, D.289, S.290, G.291, G.292 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.290, B:S.290, B:G.291, B:G.292 Salt bridges: B:R.214

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ma, H. et al., PAC-FragmentDEL - photoactivated covalent capture of DNA-encoded fragments for hit discovery. Rsc Med Chem (2022)

Release Date

2022-09-14

Peptides

UDP-N-acetylglucosamine 2-epimerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

UDP-N-acetylglucosamine 2-epimerase

Related Entries With Identical Sequence