SMTL ID : 8ahr.1

Crystal structure of D-amino acid aminotransferase from Aminobacterium colombiense in holo form with PLP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)

PLP.1: 17 residues within 4Å: Chain A: H.50, R.53, R.138, K.144, Y.148, E.174, G.175, S.176, H.177, S.178, T.179, L.197, G.199, T.200, T.201, G.236, T.237 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:K.144, A:L.197 Hydrogen bonds: A:Y.148, A:S.176, A:T.200, A:T.200, A:T.201, A:T.201, A:T.237 Water bridges: A:R.53, A:R.53, A:R.138, A:T.179, A:R.202 Salt bridges: A:H.50, A:R.53 PLP.2: 17 residues within 4Å: Chain B: H.50, R.53, R.138, K.144, Y.148, E.174, G.175, S.176, H.177, S.178, T.179, L.197, G.199, T.200, T.201, G.236, T.237 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:K.144, B:L.197 Hydrogen bonds: B:Y.148, B:T.200, B:T.201, B:T.237 Water bridges: B:E.35, B:R.53, B:E.174, B:R.202 Salt bridges: B:H.50, B:R.53, B:K.144

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shilova, S.A. et al., To the Understanding of Catalysis by D-Amino Acid Transaminases: A Case Study of the Enzyme from Aminobacterium colombiense. Molecules (2023)

Release Date

2022-08-03

Peptides

Aminotransferase class IV: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Aminotransferase class IV

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