SMTL ID : 8aii.1

High Resolution Crystal Structure of Enterococcus faecium Nicotinate Nucleotide Adenylyltransferase Complexed with Adenine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: S.106, Y.107, T.108, W.139, Y.140 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.108, A:T.108, A:T.108, A:Y.140 Water bridges: A:Y.109 SO4.4: 5 residues within 4Å: Chain B: S.106, Y.107, T.108, W.139, Y.140 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:T.108, B:T.108, B:Y.140 Water bridges: B:T.108, B:T.108, B:Y.109

2 x ADE: ADENINE(Non-covalent)

ADE.2: 7 residues within 4Å: Chain A: G.32, T.33, F.34, H.38, H.41, S.178, S.179 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.33, A:F.34, A:H.38, A:S.179, A:S.179 Water bridges: A:T.180 ADE.5: 7 residues within 4Å: Chain B: G.32, T.33, F.34, H.38, H.41, S.178, S.179 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:T.33, B:T.33, B:F.34, B:H.38, B:S.179, B:S.179 Water bridges: B:T.180

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain A: N.119, P.120, D.121, T.122 No protein-ligand interaction detected (PLIP) MG.6: 4 residues within 4Å: Chain B: N.119, P.120, D.121, T.122 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jeje, O. et al., Obtaining high yield recombinant Enterococcus faecium nicotinate nucleotide adenylyltransferase for X-ray crystallography and biophysical studies. Int.J.Biol.Macromol. (2023)

Release Date

2023-08-16

Peptides

Probable nicotinate-nucleotide adenylyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Probable nicotinate-nucleotide adenylyltransferase

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