SMTL ID : 8ail.1 (1 other biounit)

Bacillus phage VMY22 p56 in complex with Bacillus weidmannii Ung

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

hetero-2-4-mer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 12 residues within 4Å: Chain A: G.63, Q.64, D.65, P.66, Y.67, S.77, F.78, S.89, N.123, H.187 Chain D: I.36, M.40 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Q.64, A:D.65, A:F.78, A:N.123, A:N.123, A:H.187 Water bridges: A:Y.67 GOL.2: 5 residues within 4Å: Chain A: Y.54, E.55, R.155, E.156, K.157 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.156, A:K.157, A:K.157 GOL.4: 4 residues within 4Å: Chain A: A.193, R.194, G.196, F.198 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.194 GOL.5: 12 residues within 4Å: Chain B: G.63, Q.64, D.65, P.66, Y.67, L.76, S.77, F.78, N.123, H.187 Chain E: I.36, M.40 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Q.64, B:D.65, B:F.78, B:N.123, B:H.187

2 x IOD: IODIDE ION(Non-functional Binders)

IOD.3: 4 residues within 4Å: Chain A: G.138, G.140, E.142, H.143 Ligand excluded by PLIP IOD.6: 5 residues within 4Å: Chain B: G.138, K.139, G.140, E.142, H.143 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Muselmani, W. et al., A Multimodal Approach towards Genomic Identification of Protein Inhibitors of Uracil-DNA Glycosylase. Viruses (2023)

Release Date

2023-06-21

Peptides

Uracil-DNA glycosylase: AB
Bacillus phage VMY22 p56: CDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
I

B
M

C
O

D
J

E
N

F
K

Uracil-DNA glycosylase

Bacillus phage VMY22 p56

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