- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.64 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
NAD.2: 31 residues within 4Å:- Chain A: T.168, T.169, T.170, D.201, N.202, I.230, G.231, G.233, D.234, V.235, A.253, E.254, V.255, D.256, C.259, T.300, T.301, G.302, N.303, V.306, I.324, G.325, H.326, L.376, N.378, H.385
- Chain D: L.449, Q.453, K.466, Y.470
- Ligands: ADN.3
27 PLIP interactions:22 interactions with chain A, 5 interactions with chain D- Hydrophobic interactions: A:N.202, A:V.235
- Hydrogen bonds: A:T.169, A:T.169, A:T.170, A:T.170, A:T.170, A:N.202, A:D.234, A:V.235, A:V.255, A:D.256, A:N.303, A:H.326, A:N.378, A:N.378, D:Q.453, D:Q.453, D:K.466, D:K.466, D:Y.470
- Water bridges: A:G.233, A:D.234, A:D.234, A:G.236, A:F.327, A:E.330
NAD.5: 31 residues within 4Å:- Chain B: T.168, T.169, T.170, D.201, N.202, I.230, G.231, G.233, D.234, V.235, A.253, E.254, V.255, D.256, C.259, T.300, T.301, G.302, N.303, V.306, I.324, G.325, H.326, L.376, N.378, H.385
- Chain C: L.449, Q.453, K.466, Y.470
- Ligands: ADN.4
27 PLIP interactions:21 interactions with chain B, 6 interactions with chain C- Hydrophobic interactions: B:N.202, B:V.235
- Hydrogen bonds: B:T.169, B:T.170, B:T.170, B:T.170, B:N.202, B:G.233, B:D.234, B:V.235, B:V.255, B:D.256, B:N.303, B:H.326, B:N.378, B:N.378, C:Q.453, C:Q.453, C:K.466, C:K.466, C:Y.470, C:Y.470
- Water bridges: B:T.169, B:N.192, B:G.236, B:F.327, B:E.330
NAD.9: 31 residues within 4Å:- Chain B: L.449, Q.453, K.466, Y.470
- Chain C: T.168, T.169, T.170, D.201, N.202, I.230, G.231, G.233, D.234, V.235, A.253, E.254, V.255, D.256, C.259, T.300, T.301, G.302, N.303, V.306, I.324, G.325, H.326, L.376, N.378, H.385
- Ligands: ADN.10
26 PLIP interactions:20 interactions with chain C, 6 interactions with chain B- Hydrophobic interactions: C:N.202, C:V.235
- Hydrogen bonds: C:T.169, C:T.170, C:T.170, C:T.170, C:N.202, C:D.234, C:V.235, C:V.255, C:D.256, C:N.303, C:H.326, C:N.378, C:N.378, B:Q.453, B:Q.453, B:K.466, B:K.466, B:Y.470, B:Y.470
- Water bridges: C:N.192, C:G.233, C:G.236, C:F.327, C:E.330
NAD.12: 31 residues within 4Å:- Chain A: L.449, Q.453, K.466, Y.470
- Chain D: T.168, T.169, T.170, D.201, N.202, I.230, G.231, G.233, D.234, V.235, A.253, E.254, V.255, D.256, C.259, T.300, T.301, G.302, N.303, V.306, I.324, G.325, H.326, L.376, N.378, H.385
- Ligands: ADN.11
27 PLIP interactions:22 interactions with chain D, 5 interactions with chain A- Hydrophobic interactions: D:N.202, D:V.235
- Hydrogen bonds: D:T.169, D:T.169, D:T.170, D:T.170, D:T.170, D:N.202, D:G.233, D:D.234, D:V.235, D:V.255, D:D.256, D:N.303, D:H.326, D:N.378, D:N.378, A:Q.453, A:Q.453, A:K.466, A:K.466, A:Y.470
- Water bridges: D:D.234, D:D.234, D:G.236, D:F.327, D:E.330
- 4 x ADN: ADENOSINE(Non-covalent)
ADN.3: 17 residues within 4Å:- Chain A: H.64, T.66, T.69, D.142, E.167, T.168, K.197, D.201, H.326, L.376, L.379, T.383, G.384, H.385, M.390, F.394
- Ligands: NAD.2
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:T.66, A:T.69, A:T.168, A:K.197, A:K.197, A:H.326, A:H.385, A:H.385
- Water bridges: A:A.68
ADN.4: 17 residues within 4Å:- Chain B: H.64, T.66, T.69, D.142, E.167, T.168, K.197, D.201, H.326, L.376, L.379, T.383, G.384, H.385, M.390, F.394
- Ligands: NAD.5
10 PLIP interactions:10 interactions with chain B- Hydrogen bonds: B:E.167, B:T.168, B:T.168, B:K.197, B:K.197, B:H.326, B:H.385, B:H.385
- Water bridges: B:I.67, B:I.67
ADN.10: 17 residues within 4Å:- Chain C: H.64, T.66, T.69, D.142, E.167, T.168, K.197, D.201, H.326, L.376, L.379, T.383, G.384, H.385, M.390, F.394
- Ligands: NAD.9
9 PLIP interactions:9 interactions with chain C- Hydrogen bonds: C:E.167, C:T.168, C:T.168, C:K.197, C:K.197, C:H.326, C:H.385, C:H.385
- Water bridges: C:A.68
ADN.11: 17 residues within 4Å:- Chain D: H.64, T.66, T.69, D.142, E.167, T.168, K.197, D.201, H.326, L.376, L.379, T.383, G.384, H.385, M.390, F.394
- Ligands: NAD.12
10 PLIP interactions:10 interactions with chain D- Hydrogen bonds: D:T.66, D:T.69, D:T.168, D:K.197, D:K.197, D:H.326, D:H.385, D:H.385
- Water bridges: D:I.67, D:I.67
- 2 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Drozdzal, P. et al., Crystal structure of the Q65A mutant of S-adenosyl-L-homocysteine hydrolase from Pseudomonas aeruginosa cocrystallized with adenosine in the presence of K+ cations. To Be Published
- Release Date
- 2023-08-16
- Peptides
- Adenosylhomocysteinase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AAAB
CCCC
AAAD
CCC
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.64 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 4 x ADN: ADENOSINE(Non-covalent)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Drozdzal, P. et al., Crystal structure of the Q65A mutant of S-adenosyl-L-homocysteine hydrolase from Pseudomonas aeruginosa cocrystallized with adenosine in the presence of K+ cations. To Be Published
- Release Date
- 2023-08-16
- Peptides
- Adenosylhomocysteinase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AAAB
CCCC
AAAD
CCC