SMTL ID : 8aly.1

Cryo-EM structure of human tankyrase 2 SAM-PARP filament (G1032W mutant)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-20-mer

Ligands

20 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: C.218, H.221, C.226 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.221, A:C.226 ZN.2: 4 residues within 4Å: Chain B: C.218, V.220, H.221, C.226 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.218, B:H.221, B:C.226 ZN.3: 4 residues within 4Å: Chain C: C.218, H.221, C.226, I.228 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:H.221, C:C.226 ZN.4: 4 residues within 4Å: Chain D: C.218, H.221, C.226, C.229 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:H.221, D:C.226 ZN.5: 3 residues within 4Å: Chain E: C.218, H.221, C.226 2 PLIP interactions: 2 interactions with chain E Metal complexes: E:H.221, E:C.226 ZN.6: 5 residues within 4Å: Chain F: C.218, V.220, H.221, C.226, C.229 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:C.218, F:H.221, F:C.226 ZN.7: 4 residues within 4Å: Chain G: C.218, V.220, H.221, C.226 3 PLIP interactions: 3 interactions with chain G Metal complexes: G:C.218, G:H.221, G:C.226 ZN.8: 3 residues within 4Å: Chain H: C.218, H.221, C.226 3 PLIP interactions: 3 interactions with chain H Metal complexes: H:C.218, H:H.221, H:C.226 ZN.9: 4 residues within 4Å: Chain I: C.218, V.220, H.221, C.226 3 PLIP interactions: 3 interactions with chain I Metal complexes: I:C.218, I:H.221, I:C.226 ZN.10: 4 residues within 4Å: Chain J: C.218, V.220, H.221, C.226 3 PLIP interactions: 3 interactions with chain J Metal complexes: J:C.218, J:H.221, J:C.226 ZN.11: 4 residues within 4Å: Chain K: C.218, V.220, H.221, C.226 2 PLIP interactions: 2 interactions with chain K Metal complexes: K:H.221, K:C.226 ZN.12: 3 residues within 4Å: Chain L: C.218, H.221, C.226 3 PLIP interactions: 3 interactions with chain L Metal complexes: L:C.218, L:H.221, L:C.226 ZN.13: 4 residues within 4Å: Chain M: C.218, H.221, C.226, I.228 2 PLIP interactions: 2 interactions with chain M Metal complexes: M:H.221, M:C.226 ZN.14: 5 residues within 4Å: Chain N: C.218, V.220, H.221, C.226, C.229 3 PLIP interactions: 3 interactions with chain N Metal complexes: N:C.218, N:H.221, N:C.226 ZN.15: 4 residues within 4Å: Chain O: C.218, H.221, C.226, C.229 2 PLIP interactions: 2 interactions with chain O Metal complexes: O:H.221, O:C.226 ZN.16: 4 residues within 4Å: Chain P: C.218, V.220, H.221, C.226 2 PLIP interactions: 2 interactions with chain P Metal complexes: P:H.221, P:C.226 ZN.17: 4 residues within 4Å: Chain Q: C.218, V.220, H.221, C.226 3 PLIP interactions: 3 interactions with chain Q Metal complexes: Q:C.218, Q:H.221, Q:C.226 ZN.18: 2 residues within 4Å: Chain R: H.221, C.226 3 PLIP interactions: 3 interactions with chain R Metal complexes: R:H.221, R:H.221, R:C.226 ZN.19: 4 residues within 4Å: Chain S: C.218, V.220, H.221, C.226 3 PLIP interactions: 3 interactions with chain S Metal complexes: S:C.218, S:H.221, S:C.226 ZN.20: 5 residues within 4Å: Chain T: C.218, V.220, H.221, C.226, C.229 3 PLIP interactions: 3 interactions with chain T Metal complexes: T:C.218, T:H.221, T:C.226

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pillay, N. et al., Structural basis of tankyrase activation by polymerization. Nature (2022)

Release Date

2022-11-16

Peptides

Poly [ADP-ribose] polymerase tankyrase-2: ABCDEFGHIJKLMNOPQRST

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
J

C
I

D
H

E
G

F
F

G
D

H
C

I
B

J
A

K
O

L
T

M
S

N
R

O
Q

P
P

Q
N

R
M

S
L

T
K

Poly [ADP-ribose] polymerase tankyrase-2