SMTL ID : 8an3.1

S-layer protein SlaA from Sulfolobus acidocaldarius at pH 7.0

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.90 Å

Oligo State

monomer

Ligands

5 x NAG- NAG- YZT- MAN: 6-deoxy-6-sulfo-beta-D-glucopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-YZT-MAN.1: 5 residues within 4Å: Chain A: V.34, S.35, A.36, N.60, D.117 No protein-ligand interaction detected (PLIP) NAG-NAG-YZT-MAN.8: 5 residues within 4Å: Chain A: P.289, N.468, F.738, N.739, K.740 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.739, A:K.740 NAG-NAG-YZT-MAN.10: 8 residues within 4Å: Chain A: A.307, Y.327, F.329, S.330, G.540, Y.541, A.542, N.545 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.540 NAG-NAG-YZT-MAN.15: 4 residues within 4Å: Chain A: N.875, G.876, Q.975, Y.976 No protein-ligand interaction detected (PLIP) NAG-NAG-YZT-MAN.18: 5 residues within 4Å: Chain A: Y.936, L.1014, Q.1015, N.1018, T.1020 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.936

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 6 residues within 4Å: Chain A: Q.65, V.66, S.67, S.69, N.70, V.74 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.65 NAG-NAG.4: 5 residues within 4Å: Chain A: Q.293, N.295, Y.464, T.638, M.713 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 3 residues within 4Å: Chain A: N.342, Y.434, S.435 No protein-ligand interaction detected (PLIP) NAG-NAG.11: 4 residues within 4Å: Chain A: S.395, L.557, N.559, K.560 No protein-ligand interaction detected (PLIP)

2 x NAG- NAG- YZT- BGC- MAN- MAN: beta-D-glucopyranose-(1-4)-6-deoxy-6-sulfo-beta-D-glucopyranose-(1-3)-[alpha-D-mannopyranose-(1-4)][alpha-D-mannopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-YZT-BGC-MAN-MAN.3: 11 residues within 4Å: Chain A: N.276, A.480, D.694, Y.696, G.699, S.700, P.722, G.723, P.831, G.832, M.833 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.831, A:S.700 Hydrophobic interactions: A:P.722 NAG-NAG-YZT-BGC-MAN-MAN.7: 12 residues within 4Å: Chain A: A.348, G.349, A.350, L.351, T.376, N.377, G.420, G.421, P.422, T.425, I.427, T.428 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.428, A:T.428

2 x NAG- NAG- YZT: 6-deoxy-6-sulfo-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-YZT.6: 9 residues within 4Å: Chain A: N.358, F.359, T.360, T.404, T.406, T.407, S.408, S.409, N.410 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.410 NAG-NAG-YZT.13: 9 residues within 4Å: Chain A: L.256, S.258, L.259, N.633, I.659, V.660, P.662, Y.687, F.898 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.259 Hydrogen bonds: A:S.258

3 x NAG- NAG- YZT- MAN- MAN: 6-deoxy-6-sulfo-beta-D-glucopyranose-(1-3)-[alpha-D-mannopyranose-(1-4)][alpha-D-mannopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-YZT-MAN-MAN.9: 5 residues within 4Å: Chain A: N.305, L.450, N.452, V.454, N.517 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.450, A:N.305 NAG-NAG-YZT-MAN-MAN.14: 5 residues within 4Å: Chain A: N.714, V.732, Y.735, S.736, N.737 No protein-ligand interaction detected (PLIP) NAG-NAG-YZT-MAN-MAN.17: 8 residues within 4Å: Chain A: L.987, N.989, T.991, V.993, L.1034, N.1035, L.1036, L.1041 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.993, A:L.1036 Hydrogen bonds: A:N.1035

2 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN.12: 2 residues within 4Å: Chain A: N.579, N.581 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.579 NAG-NAG-MAN.16: 4 residues within 4Å: Chain A: N.914, T.1055, E.1057, T.1058 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.1058, A:T.1058

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.19: 1 residues within 4Å: Chain A: N.955 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gambelli, L. et al., Structure of the two-component S-layer of the archaeon Sulfolobus acidocaldarius. Elife (2024)

Release Date

2023-08-16

Peptides

S-layer protein A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

S-layer protein A

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