SMTL ID : 8an8.1 (1 other biounit)

Crystal structure of wild-type c-MET bound by compound 7.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.39 Å

Oligo State

monomer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: K.268, R.286 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.268 Salt bridges: A:K.268, A:R.286 SO4.2: 5 residues within 4Å: Chain A: H.112, N.117, F.118, N.121, H.124 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.121 Water bridges: A:F.118, A:F.118 Salt bridges: A:H.112, A:H.124 SO4.3: 5 residues within 4Å: Chain A: V.33, I.34, G.35, H.44, Y.109 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.35 Water bridges: A:R.36 Salt bridges: A:H.44 SO4.4: 3 residues within 4Å: Chain A: R.153, R.177, Y.185 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.185 Salt bridges: A:R.153, A:R.177

1 x MDI: 3-[bis(fluoranyl)methyl]-~{N}-methyl-~{N}-[(1~{R})-8-methyl-5-(3-methyl-1~{H}-indazol-6-yl)-1,2,3,4-tetrahydronaphthalen-1-yl]pyridine-2-carboxamide(Non-covalent)

MDI.5: 18 residues within 4Å: Chain A: I.34, F.39, V.42, A.58, K.60, E.70, V.71, S.72, L.75, L.107, P.108, Y.109, M.110, G.113, M.161, D.172, F.173, G.174 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.34, A:V.42, A:A.58, A:L.75, A:L.107, A:F.173 Hydrogen bonds: A:S.72, A:P.108, A:M.110 pi-Stacking: A:F.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Collie, G.W. et al., Discovery of a selective c-MET inhibitor with a novel binding mode. Bioorg.Med.Chem.Lett. (2022)

Release Date

2022-08-31

Peptides

Hepatocyte growth factor receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Hepatocyte growth factor receptor

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