- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-12-mer
- Ligands
- 12 x ZN: ZINC ION(Non-covalent)
- 12 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)
GTP.2: 12 residues within 4Å:- Chain A: H.37, A.40, R.41, R.70, D.152, Y.154, F.241, V.243, T.246, Y.248, E.250, Y.285
10 PLIP interactions:10 interactions with chain A- Hydrogen bonds: A:R.70, A:D.152, A:Y.248, A:Y.285
- Salt bridges: A:H.37, A:R.41, A:R.41, A:E.250
- pi-Stacking: A:Y.248, A:Y.248
GTP.4: 12 residues within 4Å:- Chain B: H.37, A.40, R.41, R.70, D.152, Y.154, F.241, V.243, T.246, Y.248, E.250, Y.285
10 PLIP interactions:10 interactions with chain B- Hydrogen bonds: B:H.37, B:R.70, B:Y.248, B:Y.285
- Salt bridges: B:H.37, B:R.41, B:R.41, B:E.250
- pi-Stacking: B:Y.248, B:Y.248
GTP.6: 12 residues within 4Å:- Chain C: H.37, A.40, R.41, R.70, D.152, Y.154, F.241, V.243, T.246, Y.248, E.250, Y.285
11 PLIP interactions:11 interactions with chain C- Hydrogen bonds: C:S.44, C:S.44, C:R.70, C:Y.248, C:Y.285
- Salt bridges: C:H.37, C:R.41, C:R.41, C:E.250
- pi-Stacking: C:Y.248, C:Y.248
GTP.8: 12 residues within 4Å:- Chain D: H.37, A.40, R.41, R.70, D.152, Y.154, F.241, V.243, T.246, Y.248, E.250, Y.285
11 PLIP interactions:11 interactions with chain D- Hydrogen bonds: D:S.44, D:S.44, D:R.70, D:Y.248, D:Y.285
- Salt bridges: D:H.37, D:R.41, D:R.41, D:E.250
- pi-Stacking: D:Y.248, D:Y.248
GTP.10: 11 residues within 4Å:- Chain E: H.37, A.40, R.41, D.152, Y.154, F.241, V.243, T.246, Y.248, E.250, Y.285
11 PLIP interactions:11 interactions with chain E- Hydrogen bonds: E:H.37, E:D.152, E:Y.248, E:E.250, E:E.250, E:Y.285
- Salt bridges: E:H.37, E:R.41, E:R.41
- pi-Stacking: E:Y.248, E:Y.248
GTP.12: 12 residues within 4Å:- Chain F: H.37, A.40, R.41, R.70, D.152, Y.154, F.241, V.243, T.246, Y.248, E.250, Y.285
11 PLIP interactions:11 interactions with chain F- Hydrogen bonds: F:S.44, F:S.44, F:R.70, F:Y.248, F:Y.285
- Salt bridges: F:H.37, F:R.41, F:R.41, F:E.250
- pi-Stacking: F:Y.248, F:Y.248
GTP.14: 11 residues within 4Å:- Chain G: H.37, A.40, R.41, D.152, Y.154, F.241, V.243, T.246, Y.248, E.250, Y.285
10 PLIP interactions:10 interactions with chain G- Hydrogen bonds: G:S.44, G:S.44, G:Y.248, G:Y.285
- Salt bridges: G:H.37, G:R.41, G:R.41, G:E.250
- pi-Stacking: G:Y.248, G:Y.248
GTP.16: 11 residues within 4Å:- Chain H: H.37, R.41, R.70, D.152, Y.154, F.241, V.243, T.246, Y.248, E.250, Y.285
11 PLIP interactions:11 interactions with chain H- Hydrogen bonds: H:S.44, H:S.44, H:R.70, H:Y.248, H:Y.285
- Salt bridges: H:H.37, H:R.41, H:R.41, H:E.250
- pi-Stacking: H:Y.248, H:Y.248
GTP.18: 12 residues within 4Å:- Chain I: H.37, A.40, R.41, R.70, D.152, Y.154, F.241, V.243, T.246, Y.248, E.250, Y.285
9 PLIP interactions:9 interactions with chain I- Hydrogen bonds: I:R.70, I:Y.248, I:Y.285
- Salt bridges: I:H.37, I:R.41, I:R.41, I:E.250
- pi-Stacking: I:Y.248, I:Y.248
GTP.20: 12 residues within 4Å:- Chain J: H.37, A.40, R.41, S.44, D.152, Y.154, F.241, V.243, T.246, Y.248, E.250, Y.285
10 PLIP interactions:10 interactions with chain J- Hydrogen bonds: J:S.44, J:S.44, J:Y.248, J:Y.285
- Salt bridges: J:H.37, J:R.41, J:R.41, J:E.250
- pi-Stacking: J:Y.248, J:Y.248
GTP.22: 12 residues within 4Å:- Chain K: H.37, A.40, R.41, R.70, D.152, Y.154, F.241, V.243, T.246, Y.248, E.250, Y.285
11 PLIP interactions:11 interactions with chain K- Hydrogen bonds: K:S.44, K:S.44, K:R.70, K:Y.248, K:Y.285
- Salt bridges: K:H.37, K:R.41, K:R.41, K:E.250
- pi-Stacking: K:Y.248, K:Y.248
GTP.24: 11 residues within 4Å:- Chain L: H.37, A.40, R.41, D.152, Y.154, F.241, V.243, T.246, Y.248, E.250, Y.285
10 PLIP interactions:10 interactions with chain L- Hydrogen bonds: L:S.44, L:S.44, L:Y.248, L:Y.285
- Salt bridges: L:H.37, L:R.41, L:R.41, L:E.250
- pi-Stacking: L:Y.248, L:Y.248
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Jones, R. et al., Structural basis and dynamics of Chikungunya alphavirus RNA capping by nsP1 capping pores. Proc.Natl.Acad.Sci.USA (2023)
- Release Date
- 2023-05-31
- Peptides
- mRNA-capping enzyme nsP1: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
CC
ED
GE
IF
KG
MH
OI
QJ
SK
VL
X
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-12-mer
- Ligands
- 12 x ZN: ZINC ION(Non-covalent)
- 12 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Jones, R. et al., Structural basis and dynamics of Chikungunya alphavirus RNA capping by nsP1 capping pores. Proc.Natl.Acad.Sci.USA (2023)
- Release Date
- 2023-05-31
- Peptides
- mRNA-capping enzyme nsP1: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
CC
ED
GE
IF
KG
MH
OI
QJ
SK
VL
X