SMTL ID : 8apy.1

Crystal structure of the H12A variant of the KDEL receptor bound to sybody

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.34 Å

Oligo State

hetero-1-1-mer

Ligands

1 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.1: 12 residues within 4Å: Chain A: L.105, V.109, N.110, H.111, Y.125, S.128, V.129, L.178, I.179, V.182, V.186 Chain B: H.56 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.109, A:Y.125, A:L.178, A:I.179, A:V.182

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Parker, J.L. et al., Crystal structure of the H12A variant of the KDEL receptor bound to sybody. To Be Published

Release Date

2023-08-23

Peptides

ER lumen protein-retaining receptor 2: A
Synthetic nanobody: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Membrane

We predict this structure to be a membrane protein.
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ER lumen protein-retaining receptor 2

Synthetic nanobody

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