SMTL ID : 8aqs.1

BA.4/5 SARS-CoV-2 Spike bound to human ACE2 (local)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: D.339, F.342, N.343, N.370, F.371 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.342, A:N.343 Hydrogen bonds: A:N.370 NAG.2: 3 residues within 4Å: Chain B: N.69, T.71, Q.356 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.69, B:Q.356 NAG.3: 2 residues within 4Å: Chain B: K.42, N.106 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.42, B:N.106 NAG.4: 2 residues within 4Å: Chain B: Q.117, N.119 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.119 NAG.5: 3 residues within 4Å: Chain B: S.436, S.561, N.562 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.436, B:S.561 NAG.6: 1 residues within 4Å: Chain B: N.338 No protein-ligand interaction detected (PLIP)

1 x ZN: ZINC ION(Non-covalent)

ZN.7: 3 residues within 4Å: Chain B: H.390, H.394, E.418 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.390, B:H.394, B:E.418

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ni, D. et al., Cryo-EM structures and binding of mouse and human ACE2 to SARS-CoV-2 variants of concern indicate that mutations enabling immune escape could expand host range. Plos Pathog. (2023)

Release Date

2023-03-01

Peptides

Spike glycoprotein,Fibritin: A
Processed angiotensin-converting enzyme 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Spike glycoprotein,Fibritin

Processed angiotensin-converting enzyme 2