- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-24-10-mer
- Ligands
- 24 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
NAD.1: 25 residues within 4Å:- Chain A: S.117, G.118, T.145, I.197, G.198, L.199, G.200, R.201, V.202, Y.220, D.221, P.222, Y.223, L.224, H.253, C.254, G.255, N.257, T.281, A.282, R.283, D.307, H.332, A.334, W.335
11 PLIP interactions:11 interactions with chain A- Hydrogen bonds: A:L.199, A:R.201, A:V.202, A:C.254, A:G.255, A:N.257, A:N.260, A:D.307, A:A.334
- Salt bridges: A:R.201
- pi-Stacking: A:Y.223
NAD.2: 25 residues within 4Å:- Chain B: S.117, G.118, T.145, I.197, G.198, L.199, G.200, R.201, V.202, Y.220, D.221, P.222, Y.223, L.224, H.253, C.254, G.255, N.257, T.281, A.282, R.283, D.307, H.332, A.334, W.335
10 PLIP interactions:10 interactions with chain B- Hydrogen bonds: B:L.199, B:R.201, B:V.202, B:C.254, B:G.255, B:N.257, B:N.260, B:A.334
- Salt bridges: B:R.201
- pi-Stacking: B:Y.223
NAD.3: 25 residues within 4Å:- Chain C: S.117, G.118, T.145, I.197, G.198, L.199, G.200, R.201, V.202, Y.220, D.221, P.222, Y.223, L.224, H.253, C.254, G.255, N.257, T.281, A.282, R.283, D.307, H.332, A.334, W.335
11 PLIP interactions:11 interactions with chain C- Hydrogen bonds: C:L.199, C:R.201, C:V.202, C:C.254, C:G.255, C:N.257, C:N.260, C:D.307, C:A.334
- Salt bridges: C:R.201
- pi-Stacking: C:Y.223
NAD.4: 25 residues within 4Å:- Chain D: S.117, G.118, T.145, I.197, G.198, L.199, G.200, R.201, V.202, Y.220, D.221, P.222, Y.223, L.224, H.253, C.254, G.255, N.257, T.281, A.282, R.283, D.307, H.332, A.334, W.335
10 PLIP interactions:10 interactions with chain D- Hydrogen bonds: D:L.199, D:R.201, D:V.202, D:C.254, D:G.255, D:N.257, D:N.260, D:A.334
- Salt bridges: D:R.201
- pi-Stacking: D:Y.223
NAD.5: 25 residues within 4Å:- Chain E: S.117, G.118, T.145, I.197, G.198, L.199, G.200, R.201, V.202, Y.220, D.221, P.222, Y.223, L.224, H.253, C.254, G.255, N.257, T.281, A.282, R.283, D.307, H.332, A.334, W.335
10 PLIP interactions:10 interactions with chain E- Hydrogen bonds: E:L.199, E:R.201, E:V.202, E:C.254, E:G.255, E:N.257, E:N.260, E:A.334
- Salt bridges: E:R.201
- pi-Stacking: E:Y.223
NAD.6: 25 residues within 4Å:- Chain F: S.117, G.118, T.145, I.197, G.198, L.199, G.200, R.201, V.202, Y.220, D.221, P.222, Y.223, L.224, H.253, C.254, G.255, N.257, T.281, A.282, R.283, D.307, H.332, A.334, W.335
11 PLIP interactions:11 interactions with chain F- Hydrogen bonds: F:L.199, F:R.201, F:V.202, F:C.254, F:G.255, F:N.257, F:N.260, F:D.307, F:A.334
- Salt bridges: F:R.201
- pi-Stacking: F:Y.223
NAD.7: 25 residues within 4Å:- Chain G: S.117, G.118, T.145, I.197, G.198, L.199, G.200, R.201, V.202, Y.220, D.221, P.222, Y.223, L.224, H.253, C.254, G.255, N.257, T.281, A.282, R.283, D.307, H.332, A.334, W.335
10 PLIP interactions:10 interactions with chain G- Hydrogen bonds: G:L.199, G:R.201, G:V.202, G:C.254, G:G.255, G:N.257, G:N.260, G:A.334
- Salt bridges: G:R.201
- pi-Stacking: G:Y.223
NAD.8: 25 residues within 4Å:- Chain H: S.117, G.118, T.145, I.197, G.198, L.199, G.200, R.201, V.202, Y.220, D.221, P.222, Y.223, L.224, H.253, C.254, G.255, N.257, T.281, A.282, R.283, D.307, H.332, A.334, W.335
11 PLIP interactions:11 interactions with chain H- Hydrogen bonds: H:L.199, H:R.201, H:V.202, H:C.254, H:G.255, H:N.257, H:N.260, H:D.307, H:A.334
- Salt bridges: H:R.201
- pi-Stacking: H:Y.223
NAD.9: 25 residues within 4Å:- Chain I: S.117, G.118, T.145, I.197, G.198, L.199, G.200, R.201, V.202, Y.220, D.221, P.222, Y.223, L.224, H.253, C.254, G.255, N.257, T.281, A.282, R.283, D.307, H.332, A.334, W.335
10 PLIP interactions:10 interactions with chain I- Hydrogen bonds: I:L.199, I:R.201, I:V.202, I:C.254, I:G.255, I:N.257, I:N.260, I:A.334
- Salt bridges: I:R.201
- pi-Stacking: I:Y.223
NAD.10: 25 residues within 4Å:- Chain J: S.117, G.118, T.145, I.197, G.198, L.199, G.200, R.201, V.202, Y.220, D.221, P.222, Y.223, L.224, H.253, C.254, G.255, N.257, T.281, A.282, R.283, D.307, H.332, A.334, W.335
11 PLIP interactions:11 interactions with chain J- Hydrogen bonds: J:L.199, J:R.201, J:V.202, J:C.254, J:G.255, J:N.257, J:N.260, J:D.307, J:A.334
- Salt bridges: J:R.201
- pi-Stacking: J:Y.223
NAD.11: 25 residues within 4Å:- Chain K: S.117, G.118, T.145, I.197, G.198, L.199, G.200, R.201, V.202, Y.220, D.221, P.222, Y.223, L.224, H.253, C.254, G.255, N.257, T.281, A.282, R.283, D.307, H.332, A.334, W.335
10 PLIP interactions:10 interactions with chain K- Hydrogen bonds: K:L.199, K:R.201, K:V.202, K:C.254, K:G.255, K:N.257, K:N.260, K:A.334
- Salt bridges: K:R.201
- pi-Stacking: K:Y.223
NAD.12: 25 residues within 4Å:- Chain L: S.117, G.118, T.145, I.197, G.198, L.199, G.200, R.201, V.202, Y.220, D.221, P.222, Y.223, L.224, H.253, C.254, G.255, N.257, T.281, A.282, R.283, D.307, H.332, A.334, W.335
11 PLIP interactions:11 interactions with chain L- Hydrogen bonds: L:L.199, L:R.201, L:V.202, L:C.254, L:G.255, L:N.257, L:N.260, L:D.307, L:A.334
- Salt bridges: L:R.201
- pi-Stacking: L:Y.223
NAD.13: 25 residues within 4Å:- Chain M: S.117, G.118, T.145, I.197, G.198, L.199, G.200, R.201, V.202, Y.220, D.221, P.222, Y.223, L.224, H.253, C.254, G.255, N.257, T.281, A.282, R.283, D.307, H.332, A.334, W.335
11 PLIP interactions:11 interactions with chain M- Hydrogen bonds: M:L.199, M:R.201, M:V.202, M:C.254, M:G.255, M:N.257, M:N.260, M:D.307, M:A.334
- Salt bridges: M:R.201
- pi-Stacking: M:Y.223
NAD.14: 25 residues within 4Å:- Chain N: S.117, G.118, T.145, I.197, G.198, L.199, G.200, R.201, V.202, Y.220, D.221, P.222, Y.223, L.224, H.253, C.254, G.255, N.257, T.281, A.282, R.283, D.307, H.332, A.334, W.335
10 PLIP interactions:10 interactions with chain N- Hydrogen bonds: N:L.199, N:R.201, N:V.202, N:C.254, N:G.255, N:N.257, N:N.260, N:A.334
- Salt bridges: N:R.201
- pi-Stacking: N:Y.223
NAD.15: 25 residues within 4Å:- Chain O: S.117, G.118, T.145, I.197, G.198, L.199, G.200, R.201, V.202, Y.220, D.221, P.222, Y.223, L.224, H.253, C.254, G.255, N.257, T.281, A.282, R.283, D.307, H.332, A.334, W.335
11 PLIP interactions:11 interactions with chain O- Hydrogen bonds: O:L.199, O:R.201, O:V.202, O:C.254, O:G.255, O:N.257, O:N.260, O:D.307, O:A.334
- Salt bridges: O:R.201
- pi-Stacking: O:Y.223
NAD.16: 25 residues within 4Å:- Chain P: S.117, G.118, T.145, I.197, G.198, L.199, G.200, R.201, V.202, Y.220, D.221, P.222, Y.223, L.224, H.253, C.254, G.255, N.257, T.281, A.282, R.283, D.307, H.332, A.334, W.335
10 PLIP interactions:10 interactions with chain P- Hydrogen bonds: P:L.199, P:R.201, P:V.202, P:C.254, P:G.255, P:N.257, P:N.260, P:A.334
- Salt bridges: P:R.201
- pi-Stacking: P:Y.223
NAD.17: 25 residues within 4Å:- Chain Q: S.117, G.118, T.145, I.197, G.198, L.199, G.200, R.201, V.202, Y.220, D.221, P.222, Y.223, L.224, H.253, C.254, G.255, N.257, T.281, A.282, R.283, D.307, H.332, A.334, W.335
10 PLIP interactions:10 interactions with chain Q- Hydrogen bonds: Q:L.199, Q:R.201, Q:V.202, Q:C.254, Q:G.255, Q:N.257, Q:N.260, Q:A.334
- Salt bridges: Q:R.201
- pi-Stacking: Q:Y.223
NAD.18: 25 residues within 4Å:- Chain R: S.117, G.118, T.145, I.197, G.198, L.199, G.200, R.201, V.202, Y.220, D.221, P.222, Y.223, L.224, H.253, C.254, G.255, N.257, T.281, A.282, R.283, D.307, H.332, A.334, W.335
11 PLIP interactions:11 interactions with chain R- Hydrogen bonds: R:L.199, R:R.201, R:V.202, R:C.254, R:G.255, R:N.257, R:N.260, R:D.307, R:A.334
- Salt bridges: R:R.201
- pi-Stacking: R:Y.223
NAD.19: 25 residues within 4Å:- Chain S: S.117, G.118, T.145, I.197, G.198, L.199, G.200, R.201, V.202, Y.220, D.221, P.222, Y.223, L.224, H.253, C.254, G.255, N.257, T.281, A.282, R.283, D.307, H.332, A.334, W.335
10 PLIP interactions:10 interactions with chain S- Hydrogen bonds: S:L.199, S:R.201, S:V.202, S:C.254, S:G.255, S:N.257, S:N.260, S:A.334
- Salt bridges: S:R.201
- pi-Stacking: S:Y.223
NAD.20: 25 residues within 4Å:- Chain T: S.117, G.118, T.145, I.197, G.198, L.199, G.200, R.201, V.202, Y.220, D.221, P.222, Y.223, L.224, H.253, C.254, G.255, N.257, T.281, A.282, R.283, D.307, H.332, A.334, W.335
11 PLIP interactions:11 interactions with chain T- Hydrogen bonds: T:L.199, T:R.201, T:V.202, T:C.254, T:G.255, T:N.257, T:N.260, T:D.307, T:A.334
- Salt bridges: T:R.201
- pi-Stacking: T:Y.223
NAD.21: 25 residues within 4Å:- Chain U: S.117, G.118, T.145, I.197, G.198, L.199, G.200, R.201, V.202, Y.220, D.221, P.222, Y.223, L.224, H.253, C.254, G.255, N.257, T.281, A.282, R.283, D.307, H.332, A.334, W.335
10 PLIP interactions:10 interactions with chain U- Hydrogen bonds: U:L.199, U:R.201, U:V.202, U:C.254, U:G.255, U:N.257, U:N.260, U:A.334
- Salt bridges: U:R.201
- pi-Stacking: U:Y.223
NAD.22: 25 residues within 4Å:- Chain V: S.117, G.118, T.145, I.197, G.198, L.199, G.200, R.201, V.202, Y.220, D.221, P.222, Y.223, L.224, H.253, C.254, G.255, N.257, T.281, A.282, R.283, D.307, H.332, A.334, W.335
11 PLIP interactions:11 interactions with chain V- Hydrogen bonds: V:L.199, V:R.201, V:V.202, V:C.254, V:G.255, V:N.257, V:N.260, V:D.307, V:A.334
- Salt bridges: V:R.201
- pi-Stacking: V:Y.223
NAD.23: 25 residues within 4Å:- Chain W: S.117, G.118, T.145, I.197, G.198, L.199, G.200, R.201, V.202, Y.220, D.221, P.222, Y.223, L.224, H.253, C.254, G.255, N.257, T.281, A.282, R.283, D.307, H.332, A.334, W.335
10 PLIP interactions:10 interactions with chain W- Hydrogen bonds: W:L.199, W:R.201, W:V.202, W:C.254, W:G.255, W:N.257, W:N.260, W:A.334
- Salt bridges: W:R.201
- pi-Stacking: W:Y.223
NAD.24: 25 residues within 4Å:- Chain X: S.117, G.118, T.145, I.197, G.198, L.199, G.200, R.201, V.202, Y.220, D.221, P.222, Y.223, L.224, H.253, C.254, G.255, N.257, T.281, A.282, R.283, D.307, H.332, A.334, W.335
11 PLIP interactions:11 interactions with chain X- Hydrogen bonds: X:L.199, X:R.201, X:V.202, X:C.254, X:G.255, X:N.257, X:N.260, X:D.307, X:A.334
- Salt bridges: X:R.201
- pi-Stacking: X:Y.223
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Goradia, N. et al., Cryo-EM structure of human CtBP1/RAI2(303-362) delta(331-341) filament. To Be Published
- Release Date
- 2023-08-23
- Peptides
- C-terminal-binding protein 1: ABCDEFGHIJKLMNOPQRSTUVWX
Retinoic acid-induced protein 2: YZ01234567 - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
KL
LM
MN
NO
OP
PQ
QR
RS
ST
TU
UV
VW
WX
XY
aZ
b0
c1
d2
e3
f4
g5
h6
i7
j
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-24-10-mer
- Ligands
- 24 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Goradia, N. et al., Cryo-EM structure of human CtBP1/RAI2(303-362) delta(331-341) filament. To Be Published
- Release Date
- 2023-08-23
- Peptides
- C-terminal-binding protein 1: ABCDEFGHIJKLMNOPQRSTUVWX
Retinoic acid-induced protein 2: YZ01234567 - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
KL
LM
MN
NO
OP
PQ
QR
RS
ST
TU
UV
VW
WX
XY
aZ
b0
c1
d2
e3
f4
g5
h6
i7
j