SMTL ID : 8as9.1

Crystal structure of the talin-KANK1 complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

hetero-6-3-3-mer

Ligands

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: H.124 Chain C: R.44, H.47, E.48 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:E.48, C:E.48 Salt bridges: A:H.124 SO4.2: 4 residues within 4Å: Chain A: R.32, R.36 Chain C: I.23 Chain D: R.302 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain D Salt bridges: A:R.32, A:R.36, D:R.302 SO4.4: 8 residues within 4Å: Chain D: D.276, R.279 Chain H: D.276, R.279 Chain L: D.276, R.279 Ligands: SO4.9, SO4.14 5 PLIP interactions: 2 interactions with chain H, 1 interactions with chain D, 2 interactions with chain L Hydrogen bonds: H:D.276, L:D.276 Salt bridges: H:R.279, D:R.279, L:R.279 SO4.5: 5 residues within 4Å: Chain D: R.279 Chain H: R.279 Chain L: R.279 Ligands: SO4.10, SO4.15 3 PLIP interactions: 1 interactions with chain H, 1 interactions with chain D, 1 interactions with chain L Salt bridges: H:R.279, D:R.279, L:R.279 SO4.6: 4 residues within 4Å: Chain E: H.124 Chain G: R.44, H.47, E.48 3 PLIP interactions: 1 interactions with chain E, 2 interactions with chain G Salt bridges: E:H.124 Hydrogen bonds: G:E.48, G:E.48 SO4.7: 4 residues within 4Å: Chain E: R.32, R.36 Chain G: I.23 Chain H: R.302 3 PLIP interactions: 2 interactions with chain E, 1 interactions with chain H Salt bridges: E:R.32, E:R.36, H:R.302 SO4.9: 8 residues within 4Å: Chain D: D.276, R.279 Chain H: D.276, R.279 Chain L: D.276, R.279 Ligands: SO4.4, SO4.14 5 PLIP interactions: 1 interactions with chain H, 2 interactions with chain D, 2 interactions with chain L Salt bridges: H:R.279, D:R.279, L:R.279 Hydrogen bonds: D:D.276, L:D.276 SO4.10: 5 residues within 4Å: Chain D: R.279 Chain H: R.279 Chain L: R.279 Ligands: SO4.5, SO4.15 3 PLIP interactions: 1 interactions with chain H, 1 interactions with chain D, 1 interactions with chain L Salt bridges: H:R.279, D:R.279, L:R.279 SO4.11: 4 residues within 4Å: Chain I: H.124 Chain K: R.44, H.47, E.48 3 PLIP interactions: 1 interactions with chain I, 2 interactions with chain K Salt bridges: I:H.124 Hydrogen bonds: K:E.48, K:E.48 SO4.12: 4 residues within 4Å: Chain I: R.32, R.36 Chain K: I.23 Chain L: R.302 3 PLIP interactions: 2 interactions with chain I, 1 interactions with chain L Salt bridges: I:R.32, I:R.36, L:R.302 SO4.14: 8 residues within 4Å: Chain D: D.276, R.279 Chain H: D.276, R.279 Chain L: D.276, R.279 Ligands: SO4.4, SO4.9 5 PLIP interactions: 2 interactions with chain H, 2 interactions with chain D, 1 interactions with chain L Hydrogen bonds: H:D.276, D:D.276 Salt bridges: H:R.279, D:R.279, L:R.279 SO4.15: 5 residues within 4Å: Chain D: R.279 Chain H: R.279 Chain L: R.279 Ligands: SO4.5, SO4.10 3 PLIP interactions: 1 interactions with chain H, 1 interactions with chain D, 1 interactions with chain L Salt bridges: H:R.279, D:R.279, L:R.279

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain D: R.24, E.28 Chain H: R.24, E.28 Chain L: R.24, E.28 Ligands: GOL.8, GOL.13 9 PLIP interactions: 3 interactions with chain L, 3 interactions with chain D, 3 interactions with chain H Hydrogen bonds: L:R.24, L:R.24, L:E.28, D:R.24, D:R.24, D:E.28, H:R.24, H:R.24, H:E.28 GOL.8: 8 residues within 4Å: Chain D: R.24, E.28 Chain H: R.24, E.28 Chain L: R.24, E.28 Ligands: GOL.3, GOL.13 9 PLIP interactions: 3 interactions with chain L, 3 interactions with chain D, 3 interactions with chain H Hydrogen bonds: L:R.24, L:R.24, L:E.28, D:R.24, D:R.24, D:E.28, H:R.24, H:R.24, H:E.28 GOL.13: 8 residues within 4Å: Chain D: R.24, E.28 Chain H: R.24, E.28 Chain L: R.24, E.28 Ligands: GOL.3, GOL.8 9 PLIP interactions: 3 interactions with chain L, 3 interactions with chain D, 3 interactions with chain H Hydrogen bonds: L:R.24, L:R.24, L:E.28, D:R.24, D:R.24, D:E.28, H:R.24, H:R.24, H:E.28

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, X. et al., The structural basis of the talin-KANK1 interaction that coordinates the actin and microtubule cytoskeletons at focal adhesions. Open Biology (2023)

Release Date

2023-06-07

Peptides

B-cell lymphoma 6 protein: ABEFIJ
KN-motif NCoR1 BBD fusion,Nuclear receptor corepressor 1: CGK
Talin-1: DHL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

E
A

F
B

I
A

J
B

C
D

G
D

K
D

D
C

H
C

L
C

B-cell lymphoma 6 protein

KN-motif NCoR1 BBD fusion,Nuclear receptor corepressor 1

Talin-1

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