SMTL ID : 8asw.1

Cryo-EM structure of yeast Elp123 in complex with alanine tRNA

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-1-1-mer

Ligands

1 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.1: 8 residues within 4Å: Chain C: C.108, H.110, I.117, C.118, C.121, Q.134, R.232, R.269 4 PLIP interactions: 4 interactions with chain C, Metal complexes: C:C.108, C:H.110, C:C.118, C:C.121

1 x 5AD: 5'-DEOXYADENOSINE(Non-covalent)

5AD.2: 12 residues within 4Å: Chain C: Y.120, C.121, P.122, S.135, Q.257, H.293, M.295, Y.327, P.328, L.330, I.332, R.376 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:Y.120, C:Q.257, C:Q.257, C:L.330, C:R.376 pi-Cation interactions: C:R.376

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jaciuk, M. et al., Cryo-EM structure of the fully assembled Elongator complex. Nucleic Acids Res. (2023)

Release Date

2022-12-07

Peptides

Elongator complex protein 1: AD
Elongator complex protein 2: B
Elongator complex protein 3: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
D

B
B

C
C

Elongator complex protein 1

Elongator complex protein 2

Elongator complex protein 3

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