SMTL ID : 8at0.2 (1 other biounit)

PotF with mutation D247K

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x MLI: MALONATE ION(Non-functional Binders)

MLI.1: 2 residues within 4Å: Chain A: A.19, E.22 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.22 Water bridges: A:E.22

1 x ONT: (2~{S})-1-(2-methoxyethoxy)propan-2-amine(Non-covalent)

ONT.2: 4 residues within 4Å: Chain A: L.88, L.91, R.314, L.317 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.314

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 1 residues within 4Å: Chain A: E.142 No protein-ligand interaction detected (PLIP)

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 4 residues within 4Å: Chain A: T.3, H.5, K.259, N.260 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:H.5, A:K.259 SO4.5: 4 residues within 4Å: Chain A: V.297, S.298, A.299, R.302 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.299, A:R.302 Water bridges: A:E.300

1 x JFN: (2R)-1-methoxypropan-2-amine(Non-covalent)

JFN.6: 2 residues within 4Å: Chain A: M.45, G.47 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kroeger, P. et al., A fluorescent biosensor for the visualization of Agmatine. To Be Published

Release Date

2024-03-06

Peptides

Putrescine-binding periplasmic protein PotF: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Putrescine-binding periplasmic protein PotF

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