SMTL ID : 8at1.1

CRYSTAL STRUCTURES OF ASPARTATE CARBAMOYLTRANSFERASE LIGATED WITH PHOSPHONOACETAMIDE, MALONATE, AND CTP OR ATP AT 2.8-ANGSTROMS RESOLUTION AND NEUTRAL P*H

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-6-6-mer

Ligands

6 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 10 residues within 4Å: Chain A: R.105, H.134, R.167, T.168, R.229, Q.231, L.267, P.268 Chain E: K.84 Ligands: PCT.3 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain E Hydrophobic interactions: A:R.167, A:T.168 Hydrogen bonds: A:R.167, A:R.229, A:Q.231, E:K.84 GLC-GLC.2: 10 residues within 4Å: Chain C: R.105, H.134, R.167, T.168, R.229, Q.231, L.267, P.268 Chain K: K.84 Ligands: PCT.6 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:R.167, C:T.168 Hydrogen bonds: C:R.105, C:R.105, C:R.167, C:R.229 GLC-GLC.9: 10 residues within 4Å: Chain E: R.105, H.134, R.167, T.168, R.229, Q.231, L.267, P.268 Chain I: K.84 Ligands: PCT.11 6 PLIP interactions: 1 interactions with chain I, 5 interactions with chain E Hydrogen bonds: I:K.84, E:R.167, E:R.229, E:Q.231 Hydrophobic interactions: E:R.167, E:T.168 GLC-GLC.10: 10 residues within 4Å: Chain C: K.84 Chain G: R.105, H.134, R.167, T.168, R.229, Q.231, L.267, P.268 Ligands: PCT.14 6 PLIP interactions: 6 interactions with chain G Hydrophobic interactions: G:R.167, G:T.168 Hydrogen bonds: G:R.105, G:R.105, G:R.167, G:R.229 GLC-GLC.17: 10 residues within 4Å: Chain A: K.84 Chain I: R.105, H.134, R.167, T.168, R.229, Q.231, L.267, P.268 Ligands: PCT.19 6 PLIP interactions: 5 interactions with chain I, 1 interactions with chain A Hydrophobic interactions: I:R.167, I:T.168 Hydrogen bonds: I:R.167, I:R.229, I:Q.231, A:K.84 GLC-GLC.18: 10 residues within 4Å: Chain G: K.84 Chain K: R.105, H.134, R.167, T.168, R.229, Q.231, L.267, P.268 Ligands: PCT.22 6 PLIP interactions: 6 interactions with chain K Hydrophobic interactions: K:R.167, K:T.168 Hydrogen bonds: K:R.105, K:R.105, K:R.167, K:R.229

6 x PCT: PHOSPHONOACETAMIDE(Non-covalent)

PCT.3: 13 residues within 4Å: Chain A: A.51, S.52, T.53, R.54, T.55, R.105, H.134, Q.137, P.266, L.267 Chain E: S.80, K.84 Ligands: GLC-GLC.1 11 PLIP interactions: 9 interactions with chain A, 2 interactions with chain E Hydrogen bonds: A:S.52, A:T.53, A:R.54, A:R.54, A:T.55, A:T.55, A:R.105, A:R.105, A:Q.137, E:S.80, E:S.80 PCT.6: 14 residues within 4Å: Chain C: A.51, S.52, T.53, R.54, T.55, R.105, H.134, Q.137, P.266, L.267, P.268 Chain K: S.80, K.84 Ligands: GLC-GLC.2 10 PLIP interactions: 8 interactions with chain C, 2 interactions with chain K Hydrogen bonds: C:S.52, C:T.53, C:R.54, C:R.54, C:T.55, C:R.105, C:R.105, C:Q.137, K:S.80, K:K.84 PCT.11: 13 residues within 4Å: Chain E: A.51, S.52, T.53, R.54, T.55, R.105, H.134, Q.137, P.266, L.267 Chain I: S.80, K.84 Ligands: GLC-GLC.9 11 PLIP interactions: 9 interactions with chain E, 2 interactions with chain I Hydrogen bonds: E:S.52, E:T.53, E:R.54, E:R.54, E:T.55, E:T.55, E:R.105, E:R.105, E:Q.137, I:S.80, I:S.80 PCT.14: 14 residues within 4Å: Chain C: S.80, K.84 Chain G: A.51, S.52, T.53, R.54, T.55, R.105, H.134, Q.137, P.266, L.267, P.268 Ligands: GLC-GLC.10 10 PLIP interactions: 2 interactions with chain C, 8 interactions with chain G Hydrogen bonds: C:S.80, C:K.84, G:S.52, G:T.53, G:R.54, G:R.54, G:T.55, G:R.105, G:R.105, G:Q.137 PCT.19: 13 residues within 4Å: Chain A: S.80, K.84 Chain I: A.51, S.52, T.53, R.54, T.55, R.105, H.134, Q.137, P.266, L.267 Ligands: GLC-GLC.17 11 PLIP interactions: 9 interactions with chain I, 2 interactions with chain A Hydrogen bonds: I:S.52, I:T.53, I:R.54, I:R.54, I:T.55, I:T.55, I:R.105, I:R.105, I:Q.137, A:S.80, A:S.80 PCT.22: 14 residues within 4Å: Chain G: S.80, K.84 Chain K: A.51, S.52, T.53, R.54, T.55, R.105, H.134, Q.137, P.266, L.267, P.268 Ligands: GLC-GLC.18 10 PLIP interactions: 8 interactions with chain K, 2 interactions with chain G Hydrogen bonds: K:S.52, K:T.53, K:R.54, K:R.54, K:T.55, K:R.105, K:R.105, K:Q.137, G:S.80, G:K.84

6 x ZN: ZINC ION(Non-covalent)

ZN.4: 4 residues within 4Å: Chain B: C.109, C.114, C.138, C.141 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.109, B:C.114, B:C.138, B:C.141 ZN.7: 4 residues within 4Å: Chain D: C.109, C.114, C.138, C.141 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.109, D:C.114, D:C.138, D:C.141 ZN.12: 4 residues within 4Å: Chain F: C.109, C.114, C.138, C.141 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.109, F:C.114, F:C.138, F:C.141 ZN.15: 4 residues within 4Å: Chain H: C.109, C.114, C.138, C.141 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:C.109, H:C.114, H:C.138, H:C.141 ZN.20: 4 residues within 4Å: Chain J: C.109, C.114, C.138, C.141 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:C.109, J:C.114, J:C.138, J:C.141 ZN.23: 4 residues within 4Å: Chain L: C.109, C.114, C.138, C.141 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:C.109, L:C.114, L:C.138, L:C.141

6 x CTP: CYTIDINE-5'-TRIPHOSPHATE(Non-covalent)

CTP.5: 10 residues within 4Å: Chain B: E.10, I.12, D.19, H.20, K.60, N.84, I.86, Y.89, V.91, K.94 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:I.86, B:V.91 Hydrogen bonds: B:I.12, B:K.60, B:K.60, B:Y.89 Salt bridges: B:H.20, B:K.94, B:K.94, B:K.94 CTP.8: 12 residues within 4Å: Chain D: V.9, E.10, A.11, I.12, V.17, H.20, K.60, N.84, I.86, Y.89, V.91, K.94 10 PLIP interactions: 10 interactions with chain D Hydrophobic interactions: D:I.86 Hydrogen bonds: D:V.9, D:V.9, D:I.12, D:K.60, D:N.84, D:Y.89 Salt bridges: D:H.20, D:K.94, D:K.94 CTP.13: 10 residues within 4Å: Chain F: E.10, I.12, D.19, H.20, K.60, N.84, I.86, Y.89, V.91, K.94 10 PLIP interactions: 10 interactions with chain F Hydrophobic interactions: F:I.86, F:V.91 Hydrogen bonds: F:I.12, F:K.60, F:K.60, F:Y.89 Salt bridges: F:H.20, F:K.94, F:K.94, F:K.94 CTP.16: 12 residues within 4Å: Chain H: V.9, E.10, A.11, I.12, V.17, H.20, K.60, N.84, I.86, Y.89, V.91, K.94 10 PLIP interactions: 10 interactions with chain H Hydrophobic interactions: H:I.86 Hydrogen bonds: H:V.9, H:V.9, H:I.12, H:K.60, H:N.84, H:Y.89 Salt bridges: H:H.20, H:K.94, H:K.94 CTP.21: 10 residues within 4Å: Chain J: E.10, I.12, D.19, H.20, K.60, N.84, I.86, Y.89, V.91, K.94 10 PLIP interactions: 10 interactions with chain J Hydrophobic interactions: J:I.86, J:V.91 Hydrogen bonds: J:I.12, J:K.60, J:K.60, J:Y.89 Salt bridges: J:H.20, J:K.94, J:K.94, J:K.94 CTP.24: 12 residues within 4Å: Chain L: V.9, E.10, A.11, I.12, V.17, H.20, K.60, N.84, I.86, Y.89, V.91, K.94 10 PLIP interactions: 10 interactions with chain L Hydrophobic interactions: L:I.86 Hydrogen bonds: L:V.9, L:V.9, L:I.12, L:K.60, L:N.84, L:Y.89 Salt bridges: L:H.20, L:K.94, L:K.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gouaux, J.E. et al., Crystal structures of aspartate carbamoyltransferase ligated with phosphonoacetamide, malonate, and CTP or ATP at 2.8-A resolution and neutral pH. Biochemistry (1990)

Release Date

1990-10-15

Peptides

ASPARTATE CARBAMOYLTRANSFERASE (R STATE), CATALYTIC CHAIN: ACEGIK
ASPARTATE CARBAMOYLTRANSFERASE REGULATORY CHAIN: BDFHJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
A

G
C

I
A

K
C

B
B

D
D

F
B

H
D

J
B

L
D

ASPARTATE CARBAMOYLTRANSFERASE (R STATE), CATALYTIC CHAIN

ASPARTATE CARBAMOYLTRANSFERASE REGULATORY CHAIN

Related Entries With Identical Sequence