SMTL ID : 8au3.2 (1 other biounit)

c-MET Y1234E,Y1235E mutant in complex with Tepotinib

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.26 Å

Oligo State

monomer

Ligands

1 x 3E8: 3-[1-(3-{5-[(1-methylpiperidin-4-yl)methoxy]pyrimidin-2-yl}benzyl)-6-oxo-1,6-dihydropyridazin-3-yl]benzonitrile(Non-covalent)

3E8.1: 18 residues within 4Å: Chain A: I.34, A.58, L.90, L.107, P.108, Y.109, M.110, K.111, G.113, D.114, N.117, R.158, M.161, A.171, D.172, A.176, Y.180, D.181 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:A.58, A:L.90, A:L.107, A:L.107, A:M.110, A:D.114, A:A.171, A:D.172, A:Y.180 Hydrogen bonds: A:M.110, A:N.117, A:D.172 pi-Stacking: A:Y.180

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.2: 4 residues within 4Å: Chain A: N.125, T.127, D.130 Ligands: PEG.3 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.130

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 6 residues within 4Å: Chain A: F.118, H.124, N.125, D.130, F.166 Ligands: PG4.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.125

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gradler, U. et al., Biophysical and structural characterization of the impacts of MET phosphorylation on tepotinib binding. J.Biol.Chem. (2023)

Release Date

2023-09-06

Peptides

Hepatocyte growth factor receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Hepatocyte growth factor receptor

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