SMTL ID : 8au5.1

c-MET F1200I mutant in complex with Tepotinib

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.72 Å

Oligo State

monomer

Ligands

1 x 3E8: 3-[1-(3-{5-[(1-methylpiperidin-4-yl)methoxy]pyrimidin-2-yl}benzyl)-6-oxo-1,6-dihydropyridazin-3-yl]benzonitrile(Non-covalent)

3E8.1: 17 residues within 4Å: Chain A: I.34, A.58, L.90, L.107, P.108, Y.109, M.110, K.111, G.113, D.114, R.158, M.161, A.171, D.172, A.176, Y.180, D.181 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:A.58, A:L.90, A:L.107, A:D.114, A:A.171, A:Y.180, A:Y.180 Hydrogen bonds: A:M.110, A:D.172 pi-Stacking: A:Y.180

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 1 residues within 4Å: Chain A: T.211 No protein-ligand interaction detected (PLIP) EDO.3: 1 residues within 4Å: Chain A: I.295 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.295 EDO.5: 6 residues within 4Å: Chain A: R.153, M.200, F.210, S.214, D.215, S.218 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.153, A:T.211, A:S.218

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gradler, U. et al., Biophysical and structural characterization of the impacts of MET phosphorylation on tepotinib binding. J.Biol.Chem. (2023)

Release Date

2023-09-06

Peptides

Hepatocyte growth factor receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Hepatocyte growth factor receptor