SMTL ID : 8aue.1 (1 other biounit)

12-oxophytodienoate reductase 3 (OPR3) from Solanum lycopersicum in complex with 2-methoxyethyl (Z)-2-(hydroxyimino)-3-oxobutanoate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

monomer

Ligands

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 19 residues within 4Å: Chain A: A.36, P.37, M.38, T.39, G.70, Q.112, H.191, H.194, R.243, Y.290, S.325, G.326, G.327, Y.347, G.348, R.349, F.375, Y.376 Ligands: O8R.2 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:M.38, A:R.349, A:F.375, A:Y.376 Hydrogen bonds: A:P.37, A:T.39, A:G.70, A:Q.112, A:Q.112, A:R.243, A:R.243, A:Y.290, A:S.325, A:G.326, A:G.327, A:Y.328, A:G.348, A:R.349 Water bridges: A:R.349, A:L.350 Salt bridges: A:R.349

1 x O8R: 2-methoxyethyl (2~{Z})-2-hydroxyimino-3-oxidanylidene-butanoate(Non-covalent)

O8R.2: 12 residues within 4Å: Chain A: T.39, F.80, W.114, H.191, H.194, Y.196, H.250, Y.290, V.291, A.292, Y.376 Ligands: FMN.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.80, A:W.114 Hydrogen bonds: A:H.191 Salt bridges: A:H.194, A:H.250

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 6 residues within 4Å: Chain A: P.75, E.122, V.123, Y.124, Q.125, P.126 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.75

1 x GLY: GLYCINE(Non-covalent)

GLY.4: 8 residues within 4Å: Chain A: P.81, L.146, M.147, P.148, G.150, Y.376, T.377, Q.378 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Ligand interactions Hydrogen bonds: A:G.150, A:Q.378, A:Q.378 Water bridges: G.4, G.4

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 8 residues within 4Å: Chain A: K.203, P.246, A.247, I.248, A.253, M.254, D.255, P.258 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.203, A:K.203, A:I.248, A:D.255 EDO.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Breukelaar, W.B. et al., Mechanistic Insights into the Ene-Reductase-Catalyzed Promiscuous Reduction of Oximes to Amines. Acs Catalysis (2023)

Release Date

2023-03-01

Peptides

12-oxophytodienoate reductase 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

12-oxophytodienoate reductase 3

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