SMTL ID : 8av2.2 (1 other biounit)

Crystal structure for the FnIII module of mouse LEP-R in complex with the anti-LEP-R nanobody VHH-4.80

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

hetero-1-1-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: G.20, E.26, R.27, N.28, L.73 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:E.26, A:L.73 Hydrogen bonds: A:N.28 Water bridges: A:D.21 NAG.2: 5 residues within 4Å: Chain A: N.57, W.60, L.73, T.75, E.76 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.75 Water bridges: A:W.60, A:L.73

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain A: R.53, T.59 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.59 Water bridges: A:R.53, A:R.53 Salt bridges: A:R.53 SO4.4: 3 residues within 4Å: Chain A: Q.69, L.70, T.71 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.69, A:T.71, A:T.71 SO4.5: 4 residues within 4Å: Chain B: Y.62, Y.63, K.68, R.110 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.63 Water bridges: B:R.110 Salt bridges: B:K.68, B:R.110 SO4.6: 3 residues within 4Å: Chain B: Y.62, S.109, R.110 7 PLIP interactions: 6 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Y.62, B:R.110 Water bridges: B:S.60, B:Y.62, B:S.109, B:S.111, A:M.18

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tsirigotaki, A. et al., Mechanism of receptor assembly via the pleiotropic adipokine Leptin. Nat.Struct.Mol.Biol. (2023)

Release Date

2023-04-05

Peptides

Leptin receptor: A
anti-mLEPR VHH 4-80: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Leptin receptor

anti-mLEPR VHH 4-80

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