SMTL ID : 8ava.1

Leukotriene A4 hydrolase in complex with 4-(4-benzylphenyl)-oxazol-2-amine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.302, H.306, E.325, Y.390 Ligands: ACT.6 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:H.302, A:H.306, A:E.325, A:E.325, ACT.6

4 x YB: YTTERBIUM (III) ION(Non-covalent)

YB.2: 2 residues within 4Å: Chain A: D.54 Ligands: ACT.7 4 PLIP interactions: 2 interactions with chain A, 1 Ligand-Ligand interactions, 1 Ligand-Water interactions Metal complexes: A:D.54, A:D.54, ACT.7, H2O.11 YB.3: 1 residues within 4Å: Chain A: D.182 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.182, H2O.6, H2O.17, H2O.24 YB.4: 2 residues within 4Å: Chain A: D.433 Ligands: ACT.12 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.433, H2O.1, H2O.1, H2O.3, H2O.3 YB.5: 1 residues within 4Å: Chain A: E.189 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.189, H2O.2, H2O.3, H2O.22

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.6: 8 residues within 4Å: Chain A: G.276, E.278, H.302, E.303, H.306, E.325, Y.390 Ligands: ZN.1 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:H.302, A:H.306 ACT.7: 3 residues within 4Å: Chain A: D.54, N.55 Ligands: YB.2 No protein-ligand interaction detected (PLIP) ACT.8: 5 residues within 4Å: Chain A: Y.274, G.275, Y.385, R.570, K.572 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.275 Water bridges: A:G.276, A:G.276, A:K.572 Salt bridges: A:R.570, A:K.572 ACT.12: 4 residues within 4Å: Chain A: K.432, D.433, Y.436 Ligands: YB.4 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.436 Water bridges: A:D.433, A:D.433, A:D.433 Salt bridges: A:K.432

2 x IMD: IMIDAZOLE(Non-covalent)

IMD.9: 7 residues within 4Å: Chain A: G.351, G.354, E.355, N.358, E.508, A.511, Q.515 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.355, A:E.355 Water bridges: A:G.354, A:Q.512 IMD.10: 8 residues within 4Å: Chain A: S.295, L.296, S.503, H.504, N.507, N.538, E.540, I.541 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.295, A:N.538 Water bridges: A:H.504, A:N.507

1 x OVO: 4-[4-(phenylmethyl)phenyl]-1,3-oxazol-2-amine(Non-covalent)

OVO.11: 16 residues within 4Å: Chain A: Q.143, A.144, Y.274, W.318, F.321, F.369, K.371, L.372, V.374, L.376, P.381, D.382, A.384, Y.385, V.388, P.389 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Q.143, A:A.144, A:F.321, A:F.321, A:F.321, A:L.376, A:P.381, A:Y.385 Hydrogen bonds: A:L.372

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.13: 5 residues within 4Å: Chain A: S.158, K.160, Y.423, K.424, S.425 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.423, A:S.425, A:S.425 Water bridges: A:K.160, A:K.160 GOL.14: 8 residues within 4Å: Chain A: F.36, R.39, W.124, L.125, T.126, P.127, P.136, Y.137 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.39, A:Y.137

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Teder, T. et al., Modulation of the 5-Lipoxygenase Pathway by Chalcogen-Containing Inhibitors of Leukotriene A 4 Hydrolase. Int J Mol Sci (2023)

Release Date

2023-05-03

Peptides

Leukotriene A-4 hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Leukotriene A-4 hydrolase

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