SMTL ID : 8avl.1 (3 other biounits)

Superoxide dismutase SodFM2 from Bacteroides fragilis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x FE: FE (III) ION(Non-covalent)

FE.1: 7 residues within 4Å: Chain A: H.26, H.74, W.124, D.158, W.160, H.162, A.163 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.26, A:H.74, A:D.158, A:H.162, H2O.4 FE.3: 7 residues within 4Å: Chain B: H.26, H.74, W.124, D.158, W.160, H.162, A.163 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.26, B:H.74, B:D.158, B:H.162, H2O.12

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 4 residues within 4Å: Chain B: E.46, E.48, G.49, K.50 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.50 Water bridges: B:E.46, B:E.48

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sendra, K.M. et al., An ancient metalloenzyme evolves through metal preference modulation. Nat Ecol Evol (2023)

Release Date

2023-04-19

Peptides

Superoxide dismutase [Fe]: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Superoxide dismutase [Fe]

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