SMTL ID : 8aw7.1

Structure of coproporphyrin III-LmCpfC R45L

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.64 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: Y.12, I.28, H.30, K.86, H.87, F.119, A.123 Ligands: HT9.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.12, A:H.30, A:H.87

1 x HT9: coproporphyrin III(Non-covalent)

HT9.2: 26 residues within 4Å: Chain A: Y.12, G.13, T.14, P.15, Y.24, Y.25, I.28, R.29, L.42, Y.46, S.53, L.55, K.86, A.113, F.119, S.120, Y.124, H.182, L.184, P.185, W.229, F.257, H.261, L.262, E.263 Ligands: GOL.1 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:Y.12, A:Y.12, A:Y.12, A:Y.24, A:Y.25, A:I.28, A:A.113, A:H.182, A:L.184, A:W.229, A:L.262 Hydrogen bonds: A:Y.12, A:T.14, A:Y.24, A:Y.46, A:S.53, A:L.262, A:E.263 pi-Stacking: A:H.182

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dali, A. et al., Active site architecture of coproporphyrin ferrochelatase with its physiological substrate coproporphyrin III: Propionate interactions and porphyrin core deformation. Protein Sci. (2023)

Release Date

2022-12-28

Peptides

Coproporphyrin III ferrochelatase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Coproporphyrin III ferrochelatase