SMTL ID : 8awh.1

Leukotriene A4 hydrolase in complex with 4-(4-Benzylphenyl)-selenazol-2-amine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.42 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.302, H.306, E.325, Y.390 Ligands: ACT.5 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:H.302, A:H.306, A:E.325, A:E.325, ACT.5

3 x YB: YTTERBIUM (III) ION(Non-covalent)

YB.2: 2 residues within 4Å: Chain A: D.54 Ligands: ACT.6 4 PLIP interactions: 2 interactions with chain A, 1 Ligand-Ligand interactions, 1 Ligand-Water interactions Metal complexes: A:D.54, A:D.54, ACT.6, H2O.8 YB.3: 1 residues within 4Å: Chain A: D.182 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.182, H2O.16 YB.4: 2 residues within 4Å: Chain A: D.433 Ligands: ACT.11 No protein-ligand interaction detected (PLIP)

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.5: 8 residues within 4Å: Chain A: G.276, E.278, H.302, E.303, H.306, E.325, Y.390 Ligands: ZN.1 3 PLIP interactions: 3 interactions with chain A Water bridges: A:G.276 Salt bridges: A:H.302, A:H.306 ACT.6: 3 residues within 4Å: Chain A: D.54, N.55 Ligands: YB.2 No protein-ligand interaction detected (PLIP) ACT.7: 5 residues within 4Å: Chain A: Y.274, G.275, Y.385, R.570, K.572 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.275 Water bridges: A:G.276, A:G.276, A:K.572 Salt bridges: A:R.570, A:K.572 ACT.11: 4 residues within 4Å: Chain A: K.432, D.433, Y.436 Ligands: YB.4 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.436 Hydrogen bonds: A:D.433 Water bridges: A:D.433, A:D.433 Salt bridges: A:K.432

2 x IMD: IMIDAZOLE(Non-covalent)

IMD.8: 7 residues within 4Å: Chain A: G.351, G.354, E.355, N.358, E.508, A.511, Q.515 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.355, A:E.355, A:N.358 Water bridges: A:G.354, A:Q.512, A:R.544 IMD.9: 8 residues within 4Å: Chain A: S.295, L.296, S.503, H.504, N.507, N.538, E.540, I.541 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.295, A:N.538 Water bridges: A:N.298, A:H.504, A:H.504, A:N.507

1 x OD6: 4-[4-(phenylmethyl)phenyl]-1,3-selenazol-2-amine(Non-covalent)

OD6.10: 16 residues within 4Å: Chain A: Q.143, A.144, Y.274, W.318, F.321, F.369, K.371, L.372, V.373, V.374, L.376, P.381, D.382, A.384, Y.385, P.389 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Q.143, A:A.144, A:F.321, A:F.321, A:F.321, A:L.376, A:P.381, A:Y.385 Hydrogen bonds: A:K.371 Water bridges: A:W.322

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.12: 5 residues within 4Å: Chain A: S.158, K.160, Y.423, K.424, S.425 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.423, A:S.425, A:S.425 Water bridges: A:K.160 GOL.13: 6 residues within 4Å: Chain A: L.350, K.464, P.465, N.466, Y.467, M.469 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.464, A:Y.467, A:Y.467

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Teder, T. et al., Modulation of the 5-Lipoxygenase Pathway by Chalcogen-Containing Inhibitors of Leukotriene A 4 Hydrolase. Int J Mol Sci (2023)

Release Date

2023-05-03

Peptides

Leukotriene A-4 hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Leukotriene A-4 hydrolase

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