SMTL ID : 8axw.1

The structure of mouse AsterC (GramD1c) with Ezetimibe

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 13 residues within 4Å: Chain A: L.53, F.54, M.60, R.87, M.89, E.108, Q.110, S.126, V.128, N.143, Y.145, Y.188 Ligands: H56.9 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.110, A:S.126, A:Y.145, A:Y.145 Water bridges: A:L.53 GOL.4: 8 residues within 4Å: Chain A: I.70, D.71, V.73, T.90, Y.91, T.92, A.105, A.106 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.90, A:Y.91 Water bridges: A:T.90, A:A.106

4 x EOH: ETHANOL(Non-functional Binders)

EOH.2: 3 residues within 4Å: Chain A: A.46, R.149, Q.153 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.149 EOH.3: 4 residues within 4Å: Chain A: F.50, T.55, W.77, Q.85 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.50 EOH.5: 4 residues within 4Å: Chain A: Y.113, E.115, L.123, R.144 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.113 Hydrogen bonds: A:R.144 EOH.6: 5 residues within 4Å: Chain A: K.30, E.115, S.116, A.119, F.121 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.119, A:F.121 Hydrogen bonds: A:E.115, A:E.115

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 3 residues within 4Å: Chain A: R.117, Q.120, R.149 Ligand excluded by PLIP

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.8: 12 residues within 4Å: Chain A: N.97, L.99, T.100, V.133, P.134, Y.135, F.139, L.176, I.177, K.179, N.180, S.181 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.97, A:N.180 Water bridges: A:K.179

1 x H56: (3~{R},4~{S})-1-(4-fluorophenyl)-3-[(3~{S})-3-(4-fluorophenyl)-3-oxidanyl-propyl]-4-(4-hydroxyphenyl)azetidin-2-one(Non-covalent)

H56.9: 21 residues within 4Å: Chain A: M.60, F.63, A.64, R.67, I.69, V.72, M.89, Y.91, I.93, E.108, V.128, T.130, F.139, T.141, N.143, Y.145, S.184, L.185, Y.188, F.189 Ligands: GOL.1 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:A.64, A:I.69, A:I.69, A:I.93, A:I.93, A:V.128, A:T.130, A:Y.188, A:Y.188 Hydrogen bonds: A:E.108, A:N.143 Water bridges: A:S.184 pi-Stacking: A:Y.91, A:Y.188

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferrari, A. et al., Aster-dependent nonvesicular transport facilitates dietary cholesterol uptake. Science (2023)

Release Date

2023-09-13

Peptides

Protein Aster-C: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein Aster-C