SMTL ID : 8ay9.1

X-RAY CRYSTAL STRUCTURE OF THE CsPYL1(V112L, T135L,F137I, T153I, V168A)-ABA-HAB1 TERNARY COMPLEX

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.28 Å

Oligo State

hetero-1-1-mer

Ligands

1 x A8S: (2Z,4E)-5-[(1S)-1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid(Non-covalent)

A8S.1: 17 residues within 4Å: Chain A: K.88, F.90, L.112, L.116, A.118, T.120, S.121, E.123, I.139, H.144, L.146, Y.149, E.170, F.188, A.189, V.192, V.193 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.90, A:L.112, A:I.139, A:H.144, A:L.146, A:Y.149, A:V.192 Hydrogen bonds: A:Y.149 Water bridges: A:K.88, A:R.145 Salt bridges: A:K.88

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 2 residues within 4Å: Chain B: D.254, D.258 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.254, B:D.258, H2O.1, H2O.2, H2O.2 MN.3: 4 residues within 4Å: Chain B: D.120, E.124, G.223, D.224 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.120, B:D.120, B:E.124, B:G.223, H2O.1 MN.4: 3 residues within 4Å: Chain B: D.65, G.66 Ligands: MN.5 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.65, B:G.66, H2O.1, H2O.1, H2O.1 MN.5: 4 residues within 4Å: Chain B: D.65, D.254, D.314 Ligands: MN.4 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.254, B:D.314, H2O.1, H2O.1, H2O.2

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 3 residues within 4Å: Chain B: I.268, R.271, R.272 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain B: R.21, S.22 Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain B: W.276, K.279 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain B: G.69, H.70, K.71 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain B: Y.194, V.204, Q.206 Ligand excluded by PLIP CL.11: 1 residues within 4Å: Chain B: K.110 Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.12: 3 residues within 4Å: Chain B: Q.297, A.298, D.301 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.301

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lozano-Juste, J. et al., Structure-guided engineering of a receptor-agonist pair for inducible activation of the ABA adaptive response to drought. Sci Adv (2023)

Release Date

2023-03-22

Peptides

Abscisic acid receptor PYL1: A
Protein phosphatase 2C 16: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Abscisic acid receptor PYL1

Protein phosphatase 2C 16

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