SMTL ID : 8ayf.1

Crystal structure of human Sphingosine-1-phosphate lyase 1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

homo-dimer

Ligands

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 6 residues within 4Å: Chain A: T.68, Y.70, K.273 Chain B: N.91, H.94, S.315 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Y.70, A:Y.70, B:N.91 Water bridges: A:K.279 Salt bridges: A:K.279, B:H.94 ACT.3: 5 residues within 4Å: Chain A: H.94 Chain B: G.67, T.68, Y.70, K.273 8 PLIP interactions: 5 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:T.68, A:N.91 Water bridges: B:Y.70, B:Y.70, B:K.279, A:S.315 Salt bridges: B:K.279, A:H.94

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 2 residues within 4Å: Chain A: I.196, Y.228 No protein-ligand interaction detected (PLIP) GOL.4: 6 residues within 4Å: Chain A: L.93, W.302, Y.307 Chain B: H.162, F.210, K.273 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.307, A:Y.307

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cellini, B. et al., Dual species sphingosine-1-phosphate lyase inhibitors to combine antifungal and anti-inflammatory activities in cystic fibrosis: a feasibility study. Sci Rep (2023)

Release Date

2023-09-13

Peptides

Sphingosine-1-phosphate lyase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Sphingosine-1-phosphate lyase 1