SMTL ID : 8ayh.1

Structure of Complement C5 in Complex with small molecule inhibitor and CVF

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x H1H: 5-methoxy-2-[[(1~{S})-1-(2-methoxyphenyl)ethyl]carbamoylamino]-4-(4-methylpentoxy)benzoic acid(Non-covalent)

H1H.1: 16 residues within 4Å: Chain B: I.6, I.9, Y.23, A.26, C.27, V.28, C.54, V.57, A.58, R.62, H.67, M.70, Q.71, G.73, R.74, M.77 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:I.6, B:A.26, B:V.57, B:R.62, B:R.62, B:Q.71, B:R.74 Hydrogen bonds: B:V.28, B:R.62 Salt bridges: B:R.74 pi-Cation interactions: B:R.62, B:R.62

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain C: P.516, D.539, V.540, D.542 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:P.516, C:D.539, C:V.540, C:D.542, C:D.542

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jendza, K. et al., A small-molecule inhibitor of C5 complement protein. Nat.Chem.Biol. (2019)

Release Date

2022-12-21

Peptides

Complement C5 beta chain: A
Complement C5 alpha chain: B
Cobra venom factor: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
A

C
B

Complement C5 beta chain

Complement C5 alpha chain

Cobra venom factor

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