SMTL ID : 8azc.1

Structure of SARS-CoV-2 NSP3 macrodomain in the apo form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 0.93 Å

Oligo State

homo-dimer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 5 residues within 4Å: Chain A: Y.13, L.14, K.15 Chain B: S.11, G.12 Ligand excluded by PLIP CL.3: 5 residues within 4Å: Chain A: S.11, G.12 Chain B: Y.13, L.14, K.15 Ligand excluded by PLIP

2 x MPO: 3[N-MORPHOLINO]PROPANE SULFONIC ACID(Non-covalent)

MPO.2: 4 residues within 4Å: Chain A: G.50, G.51, G.52, I.135 2 PLIP interactions: 2 interactions with chain A Water bridges: A:G.52, A:G.52 MPO.4: 4 residues within 4Å: Chain B: G.50, G.51, G.52, I.135 2 PLIP interactions: 2 interactions with chain B Water bridges: B:G.52, B:G.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sander, S. et al., Structure of SARS-CoV-2 NSP3 macrodomain in the apo form. To Be Published

Release Date

2023-09-13

Peptides

Papain-like protease nsp3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Papain-like protease nsp3

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