SMTL ID : 8azn.1

Structure of SARS-CoV-2 NSP3 macrodomain in complex with alpha-1-O-Me-ADPR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x RVK: Adenosine 5'-diphosphoric acid beta-[(3beta,4beta-dihydroxy-5beta-methoxytetrahydrofuran-2alpha-yl)methyl] estere(Non-covalent)

RVK.1: 23 residues within 4Å: Chain A: A.25, D.26, I.27, A.42, A.43, N.44, K.48, H.49, G.50, G.51, G.52, V.53, A.54, A.56, L.130, S.132, A.133, G.134, I.135, F.136, A.158, F.160, L.164 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:D.26, A:I.27, A:N.44, A:G.50, A:G.51, A:V.53, A:S.132, A:A.133, A:G.134, A:I.135, A:F.136, A:F.160 Water bridges: A:N.44, A:A.54, A:L.130

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sander, S. et al., Structure of SARS-CoV-2 NSP3 macrodomain in complex with alpha-1-O-Me-ADPR. To Be Published

Release Date

2024-03-20

Peptides

Papain-like protease nsp3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Papain-like protease nsp3

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