SMTL ID : 8b0g.1

2C9, C5b9-CD59 structure

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-3-1-1-mer

Ligands

5 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: S.860, N.909, N.911, V.924 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 7 residues within 4Å: Chain B: A.359, L.360, K.361 Chain C: E.241, R.242, N.243, R.281 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 7 residues within 4Å: Chain D: N.437, R.438, S.439, I.441 Chain F: D.451, V.452, T.453 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 9 residues within 4Å: Chain F: K.368, K.370, N.415, T.417 Chain I: Q.220, I.221, E.222 Chain J: Y.37, R.56 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 8 residues within 4Å: Chain G: N.238, V.239, G.240, E.242, Q.244, N.324, F.325, T.326 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Couves, E.C. et al., Structural basis for membrane attack complex inhibition by CD59. Nat Commun (2023)

Release Date

2023-02-22

Peptides

Complement C5: A
Complement component C7: B
Complement component C8 beta chain: C
Complement component C8 alpha chain: D
Complement component C8 gamma chain: E
Complement component C9: FHI
Complement component C6: G
CD59 glycoprotein: J

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
D

D
E

E
F

F
H

H
J

I
I

G
B

J
G

Complement C5

Complement component C7

Complement component C8 beta chain

Complement component C8 alpha chain

Complement component C8 gamma chain

Complement component C9

Complement component C6

CD59 glycoprotein

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