SMTL ID : 8b0g.1

2C9, C5b9-CD59 structure

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-3-1-1-mer

Ligands

5 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: S.860, N.909, N.911, V.924 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 7 residues within 4Å: Chain B: A.359, L.360, K.361 Chain C: E.241, R.242, N.243, R.281 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 7 residues within 4Å: Chain D: N.437, R.438, S.439, I.441 Chain F: D.451, V.452, T.453 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 9 residues within 4Å: Chain F: K.368, K.370, N.415, T.417 Chain I: Q.220, I.221, E.222 Chain J: Y.37, R.56 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 8 residues within 4Å: Chain G: N.238, V.239, G.240, E.242, Q.244, N.324, F.325, T.326 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Couves, E.C. et al., Structural basis for membrane attack complex inhibition by CD59. Nat Commun (2023)

Release Date

2023-02-22

Peptides

Complement C5: A
Complement component C7: B
Complement component C8 beta chain: C
Complement component C8 alpha chain: D
Complement component C8 gamma chain: E
Complement component C9: FHI
Complement component C6: G
CD59 glycoprotein: J

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
D

D
E

E
F

F
H

H
J

I
I

G
B

J
G

Complement C5

Complement component C7

Complement component C8 beta chain

Complement component C8 alpha chain

Complement component C8 gamma chain

Complement component C9

Complement component C6

CD59 glycoprotein

Related Entries With Identical Sequence