SMTL ID : 8b0o.1

Cryo-EM structure apolipoprotein N-acyltransferase Lnt from E.coli in complex with FP3

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x OJF: [(2~{R})-3-[(2~{R})-3-[[(2~{R})-1-[[(2~{R})-1-[[(2~{R})-6-[(2-aminophenyl)carbonylamino]-1-azanyl-1-oxidanylidene-hexan-2-yl]amino]-3-oxidanyl-1-oxidanylidene-propan-2-yl]amino]-3-oxidanyl-1-oxidanylidene-propan-2-yl]amino]-2-(hexadecanoylamino)-3-oxidanylidene-propyl]sulfanyl-2-hexadecanoyloxy-propyl] hexadecanoate(Non-covalent)

OJF.1: 34 residues within 4Å: Chain A: V.95, S.98, I.99, G.103, L.113, L.116, L.117, Y.120, L.163, F.166, W.168, L.255, W.257, E.287, S.288, D.292, L.293, T.332, V.359, P.360, F.361, G.362, E.363, F.378, D.379, P.381, S.383, F.385, S.407, Y.408, S.431, N.432, W.435, F.436 34 PLIP interactions: 34 interactions with chain A Hydrophobic interactions: A:I.99, A:L.113, A:L.116, A:L.117, A:L.117, A:Y.120, A:Y.120, A:L.163, A:F.166, A:F.166, A:W.168, A:L.293, A:T.332, A:V.359, A:V.359, A:P.360, A:F.361, A:F.361, A:F.361, A:F.361, A:F.378, A:F.385, A:Y.408, A:Y.408 Hydrogen bonds: A:L.255, A:L.255, A:S.288, A:S.288, A:G.362, A:E.363, A:E.363, A:S.407, A:N.432, A:W.435

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Smithers, L. et al., Structure snapshots reveal the mechanism of a bacterial membrane lipoprotein N -acyltransferase. Sci Adv (2023)

Release Date

2023-07-12

Peptides

Apolipoprotein N-acyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Apolipoprotein N-acyltransferase

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