SMTL ID : 8b0p.1

Cryo-EM structure of apolipoprotein N-acyltransferase Lnt from E. coli in complex with Pam3

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x SER- LYS- LYS- LYS- LYS: Pam3-SKKKK(Non-covalent)

SER-LYS-LYS-LYS-LYS.1: 10 residues within 4Å: Chain A: W.257, E.287, S.288, G.362, E.363, P.381, S.383, F.385, W.435 Ligands: IG7.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.385, A:W.435 Hydrogen bonds: A:S.288, A:S.288, A:G.362, A:W.435

1 x IG7: [(2~{S})-3-[(2~{S})-3-azanyl-2-(hexadecanoylamino)-3-oxidanylidene-propyl]sulfanyl-2-hexadecanoyloxy-propyl] hexadecanoate(Non-covalent)

IG7.2: 31 residues within 4Å: Chain A: W.94, V.95, S.98, F.102, L.113, L.116, L.117, Y.120, V.162, L.163, G.165, F.166, W.168, E.287, K.355, V.359, P.360, F.361, G.362, E.363, F.378, D.379, A.407, Y.408, S.431, N.432, W.435, F.436, H.445 Ligands: SER-LYS-LYS-LYS-LYS.1, SER-LYS-LYS-LYS-LYS.1 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:V.95, A:L.113, A:L.116, A:L.117, A:Y.120, A:Y.120, A:Y.120, A:L.163, A:F.166, A:F.166, A:W.168, A:P.360, A:A.407, A:Y.408 Hydrogen bonds: A:N.432

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Smithers, L. et al., Structure snapshots reveal the mechanism of a bacterial membrane lipoprotein N -acyltransferase. Sci Adv (2023)

Release Date

2023-07-12

Peptides

Apolipoprotein N-acyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Apolipoprotein N-acyltransferase

Related Entries With Identical Sequence