SMTL ID : 8b0w.1

Galectin-1 in Complex with Ligand MG49

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.53 Å

Oligo State

homo-dimer

Ligands

1 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.1: 5 residues within 4Å: Chain A: K.35, L.113, E.114, A.115, N.117 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.114

2 x OVD: ~{N}-[(2~{R},3~{R},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-5-[(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,5-bis(oxidanyl)-4-(1~{H}-1,2,3-triazol-4-ylmethoxy)oxan-2-yl]oxy-4-oxidanyl-2-propoxy-oxan-3-yl]ethanamide(Non-covalent)

OVD.2: 11 residues within 4Å: Chain A: V.30, H.43, N.45, R.47, H.51, D.53, V.58, N.60, W.67, E.70, R.72 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:H.43, A:R.47, A:R.47, A:H.51, A:N.60, A:E.70, A:E.70, A:R.72 Water bridges: A:N.45, A:E.70 Salt bridges: A:R.47, A:H.51 OVD.4: 13 residues within 4Å: Chain B: V.30, H.43, N.45, R.47, H.51, G.52, D.53, V.58, N.60, W.67, E.70, R.72, D.122 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:H.43, B:R.47, B:R.47, B:H.51, B:N.60, B:E.70, B:E.70, B:E.70, B:R.72 Water bridges: B:H.43, B:H.51 Salt bridges: B:R.47, B:H.51

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain B: N.9, K.11 7 PLIP interactions: 2 interactions with chain B, 5 interactions with chain A Hydrogen bonds: B:N.9 Salt bridges: B:K.11, A:K.126 Water bridges: A:K.126, A:K.126, A:K.126, A:K.126

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grimm, C. et al., Galectin-1 in Complex with Ligand MG49. To Be Published

Release Date

2023-09-20

Peptides

Galectin-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Galectin-1

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