SMTL ID : 8b10.1

Crystal Structure of Shank2-SAM mutant domain - L1800W

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-hexamer

Ligands

1 x BTB: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

BTB.1: 9 residues within 4Å: Chain B: L.68, D.69 Chain E: H.5, L.6, W.7, T.8, K.9, D.34, S.36 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain E Hydrogen bonds: B:L.68 Water bridges: B:L.68, B:L.68, B:D.69, E:H.5 Salt bridges: E:D.34

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 6 residues within 4Å: Chain A: K.9, M.29 Chain D: W.7, D.11, D.14, W.15 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:D.11, D:D.11, D:D.14, D:W.15

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 6 residues within 4Å: Chain D: H.24, G.50, V.51, T.52, R.53, H.56 Ligand excluded by PLIP CL.4: 7 residues within 4Å: Chain A: L.6 Chain F: H.24, G.50, V.51, T.52, R.53, H.56 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hassani Nia, F. et al., Structural deficits in key domains of Shank2 lead to alterations in postsynaptic nanoclusters and to a neurodevelopmental disorder in humans. Mol Psychiatry (2024)

Release Date

2022-11-30

Peptides

SH3 and multiple ankyrin repeat domains protein 2: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

SH3 and multiple ankyrin repeat domains protein 2