- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 4.53 Å
- Oligo State
- homo-dimer
- Ligands
- 1 x DPO: DIPHOSPHATE(Non-covalent)
- 10 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 6 residues within 4Å:- Chain A: K.208, D.211, D.697, D.701
- Ligands: DPO.1, MG.3
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:D.211, A:D.701, A:D.701
MG.3: 7 residues within 4Å:- Chain A: D.211, D.215, D.669, K.672, D.697
- Ligands: DPO.1, MG.2
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:D.215, A:D.697
MG.4: 6 residues within 4Å:- Chain A: E.226, D.227, D.237, D.474
- Ligands: DPO.1, MG.5
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:D.227, A:D.227
MG.5: 6 residues within 4Å:- Chain A: D.211, D.237, D.241, D.474
- Ligands: DPO.1, MG.4
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:D.241, A:D.474
MG.6: 6 residues within 4Å:- Chain A: D.474, D.497, N.501, D.669, K.673
- Ligands: DPO.1
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:D.497, A:D.669
MG.10: 5 residues within 4Å:- Chain B: D.227, N.238, D.241, D.474
- Ligands: PO4.9
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:D.241
MG.11: 6 residues within 4Å:- Chain B: K.208, D.211, D.241, D.705
- Ligands: PO4.8, MG.14
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:D.241
MG.12: 5 residues within 4Å:- Chain B: D.211, D.697, D.701
- Ligands: PO4.8, PO4.9
No protein-ligand interaction detected (PLIP)MG.13: 4 residues within 4Å:- Chain B: D.669, K.673
- Ligands: PO4.8, PO4.9
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:D.669, B:D.669
MG.14: 7 residues within 4Å:- Chain B: T.207, K.208, D.211, D.237, D.241
- Ligands: PO4.8, MG.11
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:D.237, B:D.241
- 1 x K: POTASSIUM ION(Non-covalent)
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.8: 13 residues within 4Å:- Chain B: K.208, D.211, D.237, D.241, D.474, D.701, K.704, D.705
- Ligands: PO4.9, MG.11, MG.12, MG.13, MG.14
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:D.701
- Salt bridges: B:K.208, B:K.704
PO4.9: 10 residues within 4Å:- Chain B: D.211, E.226, D.227, D.237, D.241, D.474
- Ligands: PO4.8, MG.10, MG.12, MG.13
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:D.211, B:E.226, B:D.474
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Strauss, J. et al., Functional and structural asymmetry suggest a unifying principle for catalysis in membrane-bound pyrophosphatases. Embo Rep. (2024)
- Release Date
- 2024-01-17
- Peptides
- K(+)-stimulated pyrophosphate-energized sodium pump: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 4.53 Å
- Oligo State
- homo-dimer
- Ligands
- 1 x DPO: DIPHOSPHATE(Non-covalent)
- 10 x MG: MAGNESIUM ION(Non-covalent)
- 1 x K: POTASSIUM ION(Non-covalent)
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Strauss, J. et al., Functional and structural asymmetry suggest a unifying principle for catalysis in membrane-bound pyrophosphatases. Embo Rep. (2024)
- Release Date
- 2024-01-17
- Peptides
- K(+)-stimulated pyrophosphate-energized sodium pump: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B - Membrane
-
We predict this structure to be a membrane protein.