SMTL ID : 8b28.1

Structure of an intron-retention variant of the plant immune signalling protein EDS1 from Vitis vinifera

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

16 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: M.206, R.207, C.295, G.297, E.335, E.342 Ligand excluded by PLIP EDO.2: 8 residues within 4Å: Chain A: I.156, P.181, L.182, V.183, H.203, P.288, F.289, Y.292 Ligand excluded by PLIP EDO.3: 1 residues within 4Å: Chain A: G.57 Ligand excluded by PLIP EDO.4: 3 residues within 4Å: Chain A: F.236, Y.237, R.238 Ligand excluded by PLIP EDO.5: 1 residues within 4Å: Chain A: E.282 Ligand excluded by PLIP EDO.6: 4 residues within 4Å: Chain A: P.168, N.169, Q.170, N.171 Ligand excluded by PLIP EDO.7: 5 residues within 4Å: Chain A: M.50, R.51, H.53, N.54, S.55 Ligand excluded by PLIP EDO.8: 6 residues within 4Å: Chain A: Q.134, I.137, F.162, K.165, A.166, Q.170 Ligand excluded by PLIP EDO.9: 6 residues within 4Å: Chain B: M.206, R.207, C.295, G.297, E.335, E.342 Ligand excluded by PLIP EDO.10: 8 residues within 4Å: Chain B: I.156, P.181, L.182, V.183, H.203, P.288, F.289, Y.292 Ligand excluded by PLIP EDO.11: 1 residues within 4Å: Chain B: G.57 Ligand excluded by PLIP EDO.12: 3 residues within 4Å: Chain B: F.236, Y.237, R.238 Ligand excluded by PLIP EDO.13: 1 residues within 4Å: Chain B: E.282 Ligand excluded by PLIP EDO.14: 4 residues within 4Å: Chain B: P.168, N.169, Q.170, N.171 Ligand excluded by PLIP EDO.15: 5 residues within 4Å: Chain B: M.50, R.51, H.53, N.54, S.55 Ligand excluded by PLIP EDO.16: 6 residues within 4Å: Chain B: Q.134, I.137, F.162, K.165, A.166, Q.170 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Voss, M. et al., A splicing variant of EDS1 from Vitis vinifera forms homodimers but no heterodimers with PAD4. Protein Sci. (2023)

Release Date

2023-04-05

Peptides

Enhanced disease susceptibility 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Enhanced disease susceptibility 1